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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccaccccaggtacccgcgtgtggagggcccctggcgctgttcttgatgagggacactcgaggcttgacccggtcctgcgcaaccccgcatatgctgcagATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCGTCATGCGGGATGAGGACGGCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01235
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16071354|gb|BI873350.1|BI873350
EST:     TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAG                         ATGACGTAGTCCGGTACGCGGCTGTT-GCGACATTGTCAGCATCAACTTCG
genomic: TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAGgcgagcttgt ... tatgctgcagATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCG
EST: gi|6544742|gb|AV390526.1|AV390526
EST:     TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAG                         ATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCG
genomic: TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAGgcgagcttgt ... tatgctgcagATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCG
EST: gi|15368364|gb|BI527790.1|BI527790
EST:     TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAG                         ATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCG
genomic: TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAGgcgagcttgt ... tatgctgcagATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCG
EST: gi|10770486|gb|AV621311.1|AV621311
EST:     TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAG                         ATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCG
genomic: TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAGgcgagcttgt ... tatgctgcagATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCG
EST: gi|15369205|gb|BI528631.1|BI528631
EST:     TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAG                         ATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCG
genomic: TATTCCCATCGTAGTATGCTGCAGCAGCAGCCAGCCTGCGACGACTGAAGgcgagcttgt ... tatgctgcagATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgagggacactcgaggcttgacccggtcctgcgcaaccccgcatatgctgcagATGACGTAGTCCGGTACGCGGCTGTTGGCGACATTGTCAGCATCAACTTCGTCATGCGGGATGAGGACGGCAAG
                 gcttgac  putative branch site (score: 4)