1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcactgctccggtgttccgcgcatgcttcctccgcttcggcacagtgcttaccccatgtgtatcgcctcgggtcctactcattcatattgcgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAGAAGACGGAGGTGCTGATGGAGAACTTTCGGAGAGCCATCG
species | Chlamydomonas reinhardtii |
transcript | EDP00834 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAGEST: gi|161804509|gb|FC088837.1|FC088837
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAGEST: gi|161795055|gb|FC078199.1|FC078199
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAGEST: gi|8828250|gb|BE211884.1|BE211884
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG GTGCCGTTCTGCCCCATGGTGGGCTCEST: gi|161810747|gb|FC098512.1|FC098512
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTC
EST: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAGEST: gi|22076899|gb|BQ825675.1|BQ825675
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAGEST: gi|9441582|gb|BE442071.1|BE442071
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAGEST: gi|9458853|gb|BE452558.1|BE452558
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
EST: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAG GTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
genomic: CCGGTAAGACAGCTTTGGCGCTGGGAATCGCCCAGGAGCTTGGAACTAAGgtgggtgttg ... cgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAG
tgcttaccccatgtgtatcgcctcgggtcctactcattcatattgcgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAGAAGACGGAGGTGCTGATGGAGAACTTTCGGAGAGCCATCG
tgcttac putative branch site (score: 2)
attcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactgctccggtgttccgcgcatgcttcctccgcttcggcacagtgcttaccccatgtgtatcgcctcgggtcctactcattcatattgcgcactgcagGTGCCGTTCTGCCCCATGGTGGGCTCGGAGGTGTACTCCAGCGAGGTCAAGAAGACGGAGGTGCTGATGGAGAACTTTCGGAGAGCCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - -cgcatgc
- - - - - - - - - - - - - - - - - - - -gcacagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcata