1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcgaaattccacttgccctcgcgtggggcccgtttccccgccacccctgtgtgtgcattctgtccaagaatatcatccaaacatacgtatgcgcctacagGCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCTCTGTCGCTAGCGAACATTCGCAGCTCGCTGATTCGCCAGGAGGACACCA
species | Chlamydomonas reinhardtii |
transcript | EDP00124 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAG GCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGEST: gi|15371034|gb|BI530460.1|BI530460
genomic: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAGgtgcgcgcgc ... gcgcctacagGCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCG
EST: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAG GCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCTEST: gi|14228762|gb|BG847578.1|BG847578
genomic: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAGgtgcgcgcgc ... gcgcctacagGCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCT
EST: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAG GCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCTEST: gi|15694553|gb|BI718858.1|BI718858
genomic: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAGgtgcgcgcgc ... gcgcctacagGCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCT
EST: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAG GCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCTEST: gi|16430742|gb|BI995968.1|BI995968
genomic: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAGgtgcgcgcgc ... gcgcctacagGCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCT
EST: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAG GCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCT
genomic: CCTACGGTCACCACACCGCTCGGCGCTGCCGGGCGACTCTTGTCCCCAAGgtgcgcgcgc ... gcgcctacagGCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCT
cctgtgtgtgcattctgtccaagaatatcatccaaacatacgtatgcgcctacagGCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCTCTGTCGCTAGCGAACATTCGCAGCTCGCTGATTCGCCAGGAGGACACCA
aagaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgaaattccacttgccctcgcgtggggcccgtttccccgccacccctgtgtgtgcattctgtccaagaatatcatccaaacatacgtatgcgcctacagGCTGCTGCTGTTCAGCCCGCGTCGGCAAACACCCGCGACATGAGCTCCGCTCTGTCGCTAGCGAACATTCGCAGCTCGCTGATTCGCCAGGAGGACACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - -cacttgc
- - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacata