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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttccgacccaccttccccgcccgctccccggcccttcccgcaatacacacacgcgctccccccctcccccctccctctacccgccccctccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGCTACTCACTGTTCACCAGCAAGGTGCCGGAGAGCGGGCCGCTGGCAGGGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP00040
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15693112|gb|BI717417.1|BI717417
EST:     CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
EST: gi|22074896|gb|BQ823672.1|BQ823672
EST:     CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGCTTCCAGGCTCTGCTGTTCGGCGGCCTGAGCGCGGGCTTCCTGTACGGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
EST: gi|23360228|gb|BU648048.1|BU648048
EST:     CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
EST: gi|10126925|gb|BE725629.1|BE725629
EST:     CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
EST: gi|22069998|gb|BQ819458.1|BQ819458
EST:     CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
EST: gi|15370366|gb|BI529792.1|BI529792
EST:     CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
EST: gi|15693708|gb|BI718013.1|BI718013
EST:     CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
EST: gi|49464031|gb|BP091944.1|BP091944
EST:     CTGCCGCGGCCGCCGTGGTGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
EST: gi|8828503|gb|BE212233.1|BE212233
EST:     CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGC
EST: gi|49463386|gb|BP091299.1|BP091299
EST:     CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGG                         GGNCTTCCAGCGCTCTGC
genomic: CTGCCGCGGCCGCCGCGGCGTCGAAGGATGAGGCCAAGAGCAAGATTCGGgtgagcgcca ... ccttccacagGG-CTTCCAG-GCTCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacacacgcgctccccccctcccccctccctctacccgccccctccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGCTACTCACTGTTCACCAGCAAGGTGCCGGAGAGCGGGCCGCTGGCAGGGC
           ctccccccctcccccc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttccgacccaccttccccgcccgctccccggcccttcccgcaatacacacacgcgctccccccctcccccctccctctacccgccccctccttccacagGGCTTCCAGGCTCTGCTGTTCGGCGGCCTGGGCGCGGGCTTCCTGTACGGCTACTCACTGTTCACCAGCAAGGTGCCGGAGAGCGGGCCGCTGGCAGGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - acccacc
- - - - - - - - - - - - - - - - - - - - -caataca