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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccgagcctggaatgagctcaccggggagctagcagtggttgccgtcggccccgcccagcaaggcgagacacgggcgggggtccggctgttactggtttcaaatgccctgtgcgtgcgcgtgcgcatgtgcattgattctcccgccgtatgttgacacgtgatcccgcagGTGGCCCGAGAT

Basic information

species Chlamydomonas reinhardtii
transcript EDO99981
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16071701|gb|BI873697.1|BI873697
EST:     ATGACGCGGATACCCAAGCTCATTGCGTTTGACCTGGATGGGACTTTGTG                         GTGGCCCGAGAT
genomic: ATGACGCGGATACCCAAGCTCATTGCGTTTGACCTGGATGGGACTTTGTGgtgagccgag ... gatcccgcagGTGGCCCGAGAT
EST: gi|15696939|gb|BI721244.1|BI721244
EST:     ATGACGCGGATACCCAAGCTCATTGCGTTTGACCTGGATGGGACTTTGTG                         GTGGCCCGAGAT
genomic: ATGACGCGGATACCCAAGCTCATTGCGTTTGACCTGGATGGGACTTTGTGgtgagccgag ... gatcccgcagGTGGCCCGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcgtgcgcatgtgcattgattctcccgccgtatgttgacacgtgatcccgcagGTGGCCCGAGAT
                                  tgttgac  putative branch site (score: 3)
                attgatt  TA-rich tract