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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccttcaattgagaatttcgagcttgccatgccggcaggactgccgcggcttgacgggggcttgacgttctcaccgcttcttgttttccccagGTGCCAATGACGTCGCCAACTCTTTCGGAACCAGTGTCGGTGCCAAGACCCTCACTCTGGCTCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO99485
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10789102|gb|AV626822.1|AV626822
EST:     GCTGGTGATTGTGGGCGCGCTGGCAGCCTTCTTCATGGCCTATGGCATTG                         GTGCCAATGACGTCGCCAACTCTTTCGGAACCAGTGTCGGTGCCAAGACCC
genomic: GCTGGTGATTGTGGGCGCGCTGGCAGCCTTCTTCATGGCCTATGGCATTGgtgagccttc ... ttttccccagGTGCCAATGACGTCGCCAACTCTTTCGGAACCAGTGTCGGTGCCAAGACCC
EST: gi|49468612|gb|BP096473.1|BP096473
EST:     GCTGGTGATTGTGGGCGCGCTGGCAGCCTTCTTCATGGCCTATGGCATTG                         GTGCCAATGACGTCGCCAACTCTTTCGGAACCAGTGTCGGTGCCAAGACCC
genomic: GCTGGTGATTGTGGGCGCGCTGGCAGCCTTCTTCATGGCCTATGGCATTGgtgagccttc ... ttttccccagGTGCCAATGACGTCGCCAACTCTTTCGGAACCAGTGTCGGTGCCAAGACCC
EST: gi|6548003|gb|AV393787.1|AV393787
EST:     GCTGGTGATTGTGGGCGCGCTGGCAGCCTTCTTCATGGCCTATGGCATTG                         GTGCCAATGACGTCGCCAACTCTTTCGGAACCAGTGTCGGTGCCAAGACCC
genomic: GCTGGTGATTGTGGGCGCGCTGGCAGCCTTCTTCATGGCCTATGGCATTGgtgagccttc ... ttttccccagGTGCCAATGACGTCGCCAACTCTTTCGGAACCAGTGTCGGTGCCAAGACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactgccgcggcttgacgggggcttgacgttctcaccgcttcttgttttccccagGTGCCAATGACGTCGCCAACTCTTTCGGAACCAGTGTCGGTGCCAAGACCCTCACTCTGGCTCAG
                             ttctcac  putative branch site (score: 2)
                             ttctcaccgcttcttg  CT-rich tract
                                          ttgtttt  TA-rich tract