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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98923
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os03g50885.1 (Oryza sativa), 3'ss of exon 1
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
      |||  ||   |  |  |   | ||||   |||     |     | ||         |  |  || | || |   ||| |  |   |||   |||||||| || || || |||||||| ||  | ||||| ||||||  ||| || ||||| || |||||||||||||| |||||||| ||||||||||||    
-----gtaagctgtttg--gatctcagggtggtttccgtttaccgaaatgctgc--------atttcttggtagcaaa-actgaggtggtttgtgt-cagGCTGGGTTCGCCGGAGATGATGCGCCCAGGGCTGTCTTCCCCAGCATTGTCGGCCGCCCTCGCCACACCGGTGTCATGGTCGGAATGGGCCAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 2
-tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
 | | |    ||    ||| |    |    ||   |        |   |  || |  ||   || |  || ||    |    | |  ||   ||   ||||||||| |||||||| || ||||| ||  | ||||| |||||    |||||||| || ||||| ||||||||||||||||| || ||||| ||||||    
gttcgtggtgctcattcgtagtatttctt-tgtagcagttatccccatgt-ttatgtgatttaatcgtatact--ttacttttcttgcgaattgctggcagGCTGGGTTTGCTGGGGACGATGCGCCCAGGGCTGTTTTCCCTAGTATCGTGGGGCGCCCCCGTCACACCGGTGTGATGGTTGGTATGGGGCAGAAGGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 2
tccatttaacttgggcgttgggcctggcgtgggc-cccgcgctgcagcgcgttgttcgagcaaacctgatgctgg-cgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
    ||  |  ||  ||||    ||  | ||  |   |   |  |   |     |   |    |  || ||| |   || |      |     | || ||||||||||||||||||||||||||| ||  | || ||||||||    || || ||||| || || ||||| ||||||||||| || ||||||||||||    
---gttcga--tgctcgttctatctaccatgttcattcattcatctctgaaacctgtaaaggcagttgttgcagaatgaccagcccatgcttctctctgcagGCTGGCTTTGCTGGTGATGATGCGCCCAGAGCAGTGTTCCCTAGTATAGTCGGCCGCCCTCGGCACACGGGTGTGATGGTTGGAATGGGCCAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G047055_T01 (Zea mays), 3'ss of exon 2
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgca-gcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
            |   | |    | |   ||  ||| |  ||  |  |   || |||       ||| |      | |   |||             ||||||||| || || || || || |||||  | || || ||||||  |||||| || || || |||||||||||||||||||| |||||||| ||||||    
------------gtaagctaccgccgatttgttccctgaactaaacacttattcttcagaatcccctaacaacaccaacttctg-------------gcagGCTGGGTTCGCCGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTTGGGCGCCCGCGCCACACCGGTGTGATGGTGGGGATGGGGCAGAAGGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G478779_T02 (Zea mays), 3'ss of exon 7
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgt-tgttcgagcaaacctgatgctggcgatcgctgtgtcgccg-tgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
                            ||| ||| |  | |    | | | |||||  |    | || ||  |||  |  |     | ||    || ||||||||| || ||||| || || |||||  | || || ||||||  ||||||||| || || |||||||| ||||| |||||||||||||| ||||||    
----------------------------gtgagccaccggtttggtcacatctgttctcggtggc-tgctgg-ggccctaacaacagcaccaacctcggcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGATGGGGCAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM5G859691_T01 (Zea mays), 3'ss of exon 7
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccg-tgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
           |  ||    ||  |||      |    |     |  ||   ||||  |    | || ||  |||  |  |     | ||    || ||||||||| || ||||| || || |||||  | |  || ||||||  ||||||||| || || |||||||| ||||| |||||||||||||| ||||||    
----------gtaagccaccggtttggtcacatctgttcttgagaatgcaaggttctcggtggc-tgctgg-ggccctaacaacagcaccaacctcggcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGTCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGATGGGGCAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G152328_T02 (Zea mays), 3'ss of exon 1
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccg-tgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
           |  ||    ||  |||      |    |     |  ||   ||||  |    | || ||  |||  |  |     | ||    || ||||||||| || ||||| || || |||||  | || || ||||||  ||||||||| || || |||||||| ||||| |||||||||||||| ||||||    
----------gtaagccaccggtttggtcacatctgttcttgagaatgcaaggttctcggtggc-tgctgg-ggccctaacaacaacaccaacctcggcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGATGGGGCAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G126010_T03 (Zea mays), 3'ss of exon 1
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcg---ttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
             |  |||    |   |    | |     |  ||  ||     |  ||  |  | |    || ||   | | |     | |  | |   ||||| || || |||||||||||||| ||  | ||||| ||||||  ||| |||||  | || |||||||||||||| |||||||| |||||||| |||    
-------------gttgttatctcgttcagaagtcttttccaacaaagcaactctactcctgtgacctaattgttgctcaactc-----ctcaatatttacagGCCGGTTTCGCTGGTGATGATGCGCCAAGAGCTGTCTTCCCCAGCATTGTGGGAAGACCACGCCACACCGGTGTCATGGTCGGCATGGGCCAAAAGGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
---------------------------------------tccatttaacttgggcgt--------tgggcctggcgtgggccccgcgctgcagcg-cgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
                                          || |||||| | | |        | ||  |   | |     |    | ||     |||  |   |  ||  |||        || ||  ||      | |  | ||||||| |||||||| ||||||||||| || |||||||| |||  ||| || || || || || ||||| ||||||||||| || |||||||| ||     
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttacattaatgttacttctgtgaatttgaaaa-attaattgcaatga----atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GLYMA18G52780.1 (Glycine max), 3'ss of exon 1
----------------------------------tccatttaacttg--ggcgt-------tgggcctggcgtgggccccgcgctgcagcg-cgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
                                  |  | | |||||   | | |       | ||  |   | |     |    | ||     |||  |   |  ||  |||        || ||          | |  | ||||||| |||||||| ||||||||||| || |||||||| |||  ||| || || || || || ||||| ||||||||||| || |||||||| ||     
gtacatgatggatcttttgtttttgtattatttgttgaataaacttactgtcatactcttgttggttttatgggaatatcattttacattaatgttacttttgtgaatttgaaaa-attaattgcaacaa----atatttgtagGCTGGTTTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GLYMA02G29160.2 (Glycine max), 3'ss of exon 2
-tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
        |||          |   |||    |   |   | ||      | | || ||  |    |     | |   | | | |||   |   |  ||||||||| |||||||| |||||||| ||  | |||||||||||   ||| ||||| || || |||||||| ||||||||||| || ||||| || |||    
tggagaacaacacctaaaacagaa-tggaactgtatctaagttgtcctttggtttttgatgatttttctctttcggtgttgatttgtgttcaattttgcagGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTGGGTCGTCCACGCCACACTGGTGTGATGGTTGGAATGGGGCAAAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GLYMA19G32990.2 (Glycine max), 3'ss of exon 1
tccatttaacttgggcgttgg-gcctggcgtgggccccgcgctgcagcg---cgttgttcg-agcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
            ||| |||||    | |  |  |   |    |  |      | |  |||  |   ||    ||| |   | | | || ||    |||     ||||||| |||||||| |||||||| ||  | |||||||||||   ||| ||||| || || || ||||| || |||||||| |||||||| ||||||    
---ggggggggggggtgttggcatttaggatctgttacaatgtaaaattattcttaattcttaattaataaaatgttaatg-ttgttgggtttgtgtgat-atagGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGGGGCGTCCACGTCACACTGGGGTGATGGTTGGGATGGGGCAGAAGGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GLYMA09G17040.1 (Glycine max), 3'ss of exon 1
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcag--cgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
    |||  |||  |  ||  |       | |     |  | |  |    |   |   || | ||   | ||    |  ||    | |   |   |  ||||||||| |||||||| |||||||| ||  | || ||||||||   ||| ||||| || || |||||||| ||||||||||| || ||||| || |||    
-agttttgtcttttggtttttgatgatactagattttgacccgtgggatacaaagagagaactaattgggtgagtact-tcaaattatgttcaattttgcagGCTGGATTTGCTGGAGATGATGCTCCAAGGGCCGTGTTCCCTAGCATTGTGGGTCGTCCACGCCACACTGGTGTGATGGTTGGAATGGGGCAAAAGGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
      | | || | |  |     | |     |    |  ||      | ||||| |  ||    | |  ||   ||||    | |     | |   |||||||| ||||||||||||||||||||  | || ||||||||    || || || || ||  | ||||| ||||| ||||| || ||||| |||||     
-----gtgagttagactgtttatttagatactgtatggttctaaccttctttgtt-gtacatgtgtaagactactgatcatgatttttgtatattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
tccatttaacttgggc-gttgggcctggcgtgggccccgcgc-tgcagcgcgttgttcgagcaaacctgatgctggcg-atcgctg-tgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
   ||| ||||    | ||| |   ||||| ||       || | ||| |  || |    |  |   |  |  |  |  ||    | ||        |  ||||||||| ||||||||||||||||| ||  | ||||||||||||   || || ||||| || || ||||| ||||| ||||| ||||||||||| |||    
---attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtg-attatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: Vv13s0019g01240.t01 (Vitis vinifera), 3'ss of exon 1
--------------tccatttaacttgggcgttgggcctg--gcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
              | | ||  |  ||   |||  |      || ||    |  |  |    |   || ||  |   |  ||||       ||| ||  |||   | | |    ||||||| ||||| || |||||||| ||| | ||||||||||||  ||| || || || ||||| ||||| ||||| ||||| || |||||||||||     
gtatcaaatgaggattctttctatgtgaatgtttagtagaatgcttgtattctacagtctgcctttttcttgtattcagtctgagataactgattgcaatgttatcttct----agGCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTCCCCAGCATTGTAGGTCGTCCCCGTCACACTGGTGTAATGGTTGGCATGGGCCAGAAAGATG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S372_48V6.1 (Physcomitrella patens), 3'ss of exon 1
tccatttaac-ttgggcgttg----ggcctggcgtg--ggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
      || |  || || ||     ||| ||   |    ||        |||     |||||  |  |  || |  || ||       ||  |  |  |  ||||||||||| || ||  | || |||||||| || ||||| ||||||  ||||||||| |||||  | |||||||| |||||||| || ||||| |||||     
---gcatagcactgtgcattataaaggcatgaaatcccagcttttgatggcattttattgttgaataattccaggcgccgga----attgaatttcaattgccgcagGCTGGTTTCGCCAGAGACGATGCCCCCCGGGCTGTTTTCCCCAGCATCGTGGGGCGGCCGAGGCACACCGGAGTGATGGTGGGCATGGGACAGAAAGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 3
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacct---gatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
 |  |||  | |     ||     ||| |  | |   | | || ||     | |  || ||| |||   ||  |||    |   | ||  |   ||  |||||||||| || ||||| || ||||| || |||||||| ||||||  ||| || || || ||| | ||||| || ||||||||||| ||||| ||||||    
-ctcttttgcatctttatttataatgg-gcagacattg-gatgtagactaatttatgatcaatcctctcgaaactgtgtttaattttggtgaattgaacgcagGCTGGTTTCGCTGGAGACGATGCTCCCCGCGCTGTTTTCCCCAGCATTGTTGGGCGCCCCAGGCACACTGGAGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
--------tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
              || | |     ||   | |  | |   |  |   ||| ||  |     ||  | || | |||||   |  ||| | ||| ||   | |  ||||||||| || ||||| ||||| ||||| ||||| ||||| ||   ||||||||| |||||  | ||||| |||||||||||||| ||||| ||||||    
aaccttaacttgcgtaccctcaatttttatcatcactt---catctgtctggagttcacatctcttgtaa-catgatg--agtaatcac-gtg-cggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------------------------------tcca---tttaacttgggc---gttgggcc--tggcgtgggccccgcgctgcagcgc----gttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
                                                                          || |     |  | |||||   | |||| |  |  |||   |  | |   |  |       ||  |  |  |||| |  |   ||  | |   |||| ||   | |  ||||||||| || ||||| ||||| ||||| ||||| ||||| ||   ||||||||| |||||  | ||||| |||||||||||||| ||||| ||||||    
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggt-attgtg-cggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S337_26V6.1 (Physcomitrella patens), 3'ss of exon 2
---tccatttaacttgggcgttgggcctggcgtgggccccgcg-ctgcagc-gcgttgttc-gagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
   | |||   |    ||||||     |         |  | | || |||  | | ||| | || | || | | || |     |   ||||  |   ||  |||||||||| || ||||| || ||||| || |||||||| ||||||  ||| || || || ||| | ||||| || ||||||||||| ||||| ||||||    
caattcatgctataatggcgttcatgataatactattcaagtgacttcagttgtgctgtccagaacgaaaccg-tgtt-----taattgtggtgaattgaacgcagGCTGGTTTCGCTGGAGACGATGCTCCCCGCGCTGTTTTCCCCAGCATTGTTGGGCGCCCCAGGCACACTGGAGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S198_157V6.1 (Physcomitrella patens), 3'ss of exon 2
----tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcga-gcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
    |      | || || ||||      | | |   | |  ||  | | | |  || |||   |||| |  |   ||  | |   |||| ||   | |  ||||||||| || ||||| ||||| ||||| ||||| ||||| ||   ||||||||| |||||  | ||||| |||||||||||||| ||||| ||||||    
gtcatgggccaagctgggtcgtta---tcgtcttcttcacatcgtggtatctctgtgatcggcacaaaacctaaaatgttggt-attgtg-cggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S381_18V6.2 (Physcomitrella patens), 3'ss of exon 2
--tccatttaacttgggcgttgggcctg-gcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----
     ||  ||  |   |    | | |  | ||      |  | || | |    ||||   || || |  |       ||    | ||  ||       |||||| || || || || |||||||| || ||||||||||| |||  |||||| || |||||  | ||||| ||||||||||| || ||||| ||||||    
gtagtatcaaatctccacaaccgtcttctgtgtctaggtcatgttggacctg--tgtttaggccaatc-aacatgtaggagtaatatggtgcatgtaatgcagGCCGGTTTCGCGGGAGATGATGCTCCCCGCGCTGTGTTTCCCAGCATCGTCGGACGGCCAAGGCACACTGGTGTGATGGTGGGCATGGGACAGAAGGACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22053164|gb|BQ810620.1|BQ810620
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|10789628|gb|AV626993.1|AV626993
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|10777850|gb|AV634530.1|AV634530
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|22053091|gb|BQ810588.1|BQ810588
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|22069702|gb|BQ819234.1|BQ819234
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|10127691|gb|BE726395.1|BE726395
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|15370241|gb|BI529667.1|BI529667
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|161797057|gb|FC085662.1|FC085662
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|22071637|gb|BQ820975.1|BQ820975
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|22070013|gb|BQ819473.1|BQ819473
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|9458838|gb|BE452551.1|BE452551
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|49461896|gb|BP089809.1|BP089809
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|14240923|gb|BG859739.1|BG859739
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|8576564|gb|BE129201.1|BE129201
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|49464429|gb|BP092342.1|BP092342
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|49469137|gb|BP096998.1|BP096998
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|10191366|gb|BE761442.1|BE761442
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
EST: gi|23362091|gb|BU649911.1|BU649911
EST:     AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAG                         GCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG
genomic: AGGGCGAGGTCTCTGCTCTGGTGTGCGACAATGGTTCGGGCATGGTGAAGgtgagcaggt ... gtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG
                 acctgat  putative branch site (score: 4)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - ttgttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtgt