Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggatgtcagcaaccagccgccttgttgaggctgtgtagaaccacgcgaggcccaacaattcagacgcgcatctgccccggccctgtcatccgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGATGATCTCTTCCACTGGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98738
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO98738 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os04g57220.2 (Oryza sativa), 3'ss of exon 1
-----------------ggatgtcagcaaccagccgccttgttgaggctgtgtagaaccacgcgaggcccaacaattcagacgcgcatctgccccggccctgtcatccgctcaacagGACCTG--CAGAAGGACCCGCCCACCTCGTGCAG----TGCGGGCCCTGCGGGCGATGATCTCTTCCACTGGCAG-----
                 ||    |  |   |   ||  ||| |  |  ||    |     | | |||    |   |   ||      | |   |  |   |||     | | |  |||   ||  |    |   ||       || || ||    ||  || ||||| |  |       |  || |  ||||     
gtcggtacgcgtctctaggcccccctctctctctcgatttgatcggtttgatctgtggtgccctaggtttgatc-tgtggatttattttttttcttgttttgtggg--ggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 1
-------------ggatgtcagcaaccagccgccttgttgaggctgtgtagaaccacgcgaggcccaacaattcagacgcgcatctgccccggccctgtcatccgctcaacagGACCTG--CAGAAGGACCCGCCCACCTCGTGCAG----TGCGGGCCCTGCGGGCGATGATCTCTTCCACTGGCAG-----
             ||    |  |   |   ||  ||| |  |  ||    |     | | |||    |   |   ||      | |   |  |   |||     | | |  |||   ||  |    |   ||       || || ||    ||  || ||||| |  |       |  || |  ||||     
gtacgcgtctctaggcccccctctctctctcgatttgatcggtttgatctgtggtgccctaggtttgatc-tgtggatttattttttttcttgttttgtggg--ggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G102471_T04 (Zea mays), 3'ss of exon 1
----ggatgtcagcaaccagccgccttgttgaggctgtgtagaaccacgcgaggcccaacaattcagacgcgcatctgccccggccctgtcatccgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGATGATCTCTTCCACTGGCAG-----
    ||    |  |  | |  ||  | | |    ||  | |   | || | |||  | |   || |   | | || |     |    |||     | |  |  |     |  ||||      |  |    ||    ||  || ||||| |  |       |  || |  ||||     
gtacggccacctccctcgattcgattggctctaactacggaaccctaccctaggttcgat--ttgatctgtggattttgggggattttgtttagGGTTTGATCGATGGCGTCGAAGAGGATCCTGAAGGAGT----TGAAGGACCTGCAGAAGGACCCGCCCACCTCCTGCAGCGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10770281|gb|AV621106.1|AV621106
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|14226605|gb|BG845437.1|BG845437
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGA
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGA-CCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGA
EST: gi|10773113|gb|AV623936.1|AV623936
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10781533|gb|AV638213.1|AV638213
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|8513778|gb|BE121673.1|BE121673
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10780538|gb|AV637218.1|AV637218
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|22068097|gb|BQ818047.1|BQ818047
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10771109|gb|AV621932.1|AV621932
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49462537|gb|BP090450.1|BP090450
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10191437|gb|BE761513.1|BE761513
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10771256|gb|AV622079.1|AV622079
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|6541542|gb|AV387326.1|AV387326
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|55562633|gb|AV624073.2|AV624073
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|9461041|gb|BE453535.1|BE453535
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10772092|gb|AV622915.1|AV622915
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10771174|gb|AV621997.1|AV621997
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|8400970|gb|BE056604.1|BE056604
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|8933117|gb|BE227878.1|BE227878
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|161822462|gb|FC109217.1|FC109217
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|8828122|gb|BE211964.1|BE211964
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|23361073|gb|BU648893.1|BU648893
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGTCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49463151|gb|BP091064.1|BP091064
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|14239897|gb|BG858713.1|BG858713
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49464890|gb|BP092803.1|BP092803
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|22054721|gb|BQ811487.1|BQ811487
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10770314|gb|AV621139.1|AV621139
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|22075597|gb|BQ824373.1|BQ824373
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49458252|gb|BP086165.1|BP086165
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49464976|gb|BP092889.1|BP092889
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10776974|gb|AV633654.1|AV633654
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49462175|gb|BP090088.1|BP090088
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|22076451|gb|BQ825227.1|BQ825227
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10128259|gb|BE726963.1|BE726963
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|8933081|gb|BE227842.1|BE227842
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10781173|gb|AV637853.1|AV637853
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|8576667|gb|BE129304.1|BE129304
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10777043|gb|AV633723.1|AV633723
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|9210517|gb|BE337432.1|BE337432
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10773698|gb|AV624521.1|AV624521
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49458367|gb|BP086280.1|BP086280
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|6545987|gb|AV391771.1|AV391771
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|22061172|gb|BQ814121.1|BQ814121
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49463815|gb|BP091728.1|BP091728
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|22060484|gb|BQ813805.1|BQ813805
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|8513846|gb|BE121741.1|BE121741
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|6551868|gb|AV397652.1|AV397652
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49461569|gb|BP089482.1|BP089482
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10770894|gb|AV621717.1|AV621717
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49463459|gb|BP091372.1|BP091372
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10126442|gb|BE725146.1|BE725146
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10772061|gb|AV622884.1|AV622884
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|23365957|gb|BU653777.1|BU653777
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10773703|gb|AV624526.1|AV624526
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10780969|gb|AV637649.1|AV637649
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|16071962|gb|BI873958.1|BI873958
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|8513636|gb|BE121531.1|BE121531
EST:     GTTTTTATGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|6543489|gb|AV389273.1|AV389273
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|22075504|gb|BQ824280.1|BQ824280
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10773848|gb|AV624671.1|AV624671
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|10772652|gb|AV623475.1|AV623475
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGNCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|6546371|gb|AV392155.1|AV392155
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|49462882|gb|BP090795.1|BP090795
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|22068196|gb|BQ818135.1|BQ818135
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
EST: gi|8286753|gb|BE024312.1|BE024312
EST:     GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAG                         GACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT
genomic: GCGGCTAGGGGCAGGCCATGGCGTCGAAGCGCATTCAGAAGGAGCTGCAGgtttgtgcaa ... cgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaggcccaacaattcagacgcgcatctgccccggccctgtcatccgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGATGATCTCTTCCACTGGCAG
                                           tccgctc  CT-rich tract
        aacaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggatgtcagcaaccagccgccttgttgaggctgtgtagaaccacgcgaggcccaacaattcagacgcgcatctgccccggccctgtcatccgctcaacagGACCTGCAGAAGGACCCGCCCACCTCGTGCAGTGCGGGCCCTGCGGGCGATGATCTCTTCCACTGGCAG

- - - - gcaacca
- - - - - - - - - - - - - - -gctgtgt
- - - - - - - - - - - - - - - - - - agaacca
- - - - - - - - - - - - - - - - - - - - - - - - - cccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcaga