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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggcggctggaggcgcgctcggtgcactgctttttggggtcaccgctgatgcgcgcggggcatattgcaatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98665
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO98665 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os03g01910.1 (Oryza sativa), 3'ss of exon 2
--------------------------gtgcggcggctggaggcgcgctcggtgcactgctttttggggtcaccgctgatgcgcgcggggcatattgcaatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG
                           | ||     |  |     |    ||||  ||   |||||  |||    | || |  |  | |||| |    ||| |||||||||||||||| || |||||||| ||| ||||||| |||||| || | |||| |||| | ||  |  | || ||||||| ||| || || ||||| |||
aagatatactgggcttgtattttgggatccgatcttttaaacaatgtattgtgctgtggcctttggattcat-attaatacttgttgtgcattt----atg-gcagGAAGAAGAAGGCAGTTCACAAGACTACCACCACTGATGACAAGAGGCTTCAAAGCACCTTGAAAAGAGTAGGAGTGAACAACATTCCTGGTATCGAAGAG

upper sequence: EDO98665 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os03g63400.1 (Oryza sativa), 3'ss of exon 2
---------------gtgcggcggctggaggcg--cgctcggtgcactgctttttg--gggtcaccgc-tgatgcgcgcggggcatattgcaatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG
                ||  |||    ||   |   |    || |  ||||| | |  | ||| |    |||  |    | |    |||    |    ||||||||||||||||| ||||||||     |||||||||||||| || |||| | ||| |||||| |  | || || |||||||||||||  |||||||||
gtgggtaaatcgcctttgtcgcgaaatgaaatgaatgtcttgttctttgcttctcgccgtgtcgcgaaatgaaacaaatgtgcttcattttgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAG

upper sequence: EDO98665 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
-------gtgcggcggctggaggcgcgctcggtgcac-----tgctttttggggtcaccg-----------ctgatgcgcgcggggcatattgcaatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG
        |  | | | |||    | | || || ||          || |||   ||  |           || ||    | ||| || | |||     |||||||||||||||| || |||||||||||  |||| || ||||||||| | || | |||| | ||  |  | || | ||||||||| || || |||||||||
caagcacctaagcctgttgggtttgtgatctgttcatagagtcaacttctggacccatagtcccatgctaactaatttatgagggacaaaatgctg---gcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG

upper sequence: EDO98665 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S28_196V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------gtgcggcggctggaggcgc-gctcggtgcactgctttttggggtcaccgctgatgcgcgcggggcatattgcaat-----gtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG
               || | ||     ||||| | |   | | | ||  | |   | | |     || |   | |  | || ||| ||||     |  |||||||||||| || || |||||||||||| |||||||||||||| ||||||| | |||| | ||||| || || ||||||||||| ||||| || || |||
ttcgtctgctactttgtactgctttgtgaggctctgggagtttccctagtctcatgtgccctatgtggtctacccttgtca-atttcaattggctgaacagGAAGAAGAAAGCTGTTCACAAGACCACCACCACTGACGACAAGAGGTTGCAGAGCACCTTGAAGCGACTCGGAGTGAACACCATTCCCGGAATTGAAGAG

upper sequence: EDO98665 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S479_10V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------gtgcggcggctggaggcgcgctcggtgcactgctttttggggtca--ccgctgatgcgcgcggggcatattgcaatgt------gcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG
                | |    |   |     || | ||  |||| |  |    | |  |   |    |   |    ||| ||    |         |||||||||||| || ||||| ||||||||||| |||||||||||| ||||||| | |||| | || || || || ||||| ||| | || || || ||||||
taaagatatcacaaaactgttttttttgaaattctggatgt-ctgcataatctcattaatctattatatcataccattcattttttcgttccgtctaacagGAAGAAGAAAGCTGTGCATAAGACCACCTCAACTGACGACAAGAGGTTGCAGAGCACCTTGAAACGACTTGGAGTGAATACCGTTCCTGGAATTGAGGAG

upper sequence: EDO98665 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: EFJ21066 (Selaginella moellendorffii), 3'ss of exon 1
gtgcggcggctggaggcgcgctcggtgcactgctttttggggtca---ccgctgatgcgcgcggggcatattgcaatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG
                                   |||||| | |     |  |||    | | |   | | |||||  |||||||||||||||| |||||||||||| |  |||| ||||||||| ||||||||||||| |||||| |  ||||||| ||||||||||||||||| ||||||
----------------------------gtaaagatttgggattagattggaagattttggtgagaattctggcaat-cgcagGAAGAAGAAGGCAGTGCACAAGACCGCGACCACCGACGACAAGAGGTTGCAAAACACGCTCAAGAGATTGGGCGTCAACACCATCCCCGGCATTGAGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16436386|gb|BM001606.1|BM001606
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10772407|gb|AV623230.1|AV623230
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10783596|gb|AV640268.1|AV640268
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10776733|gb|AV633413.1|AV633413
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10777068|gb|AV633748.1|AV633748
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|6545895|gb|AV391679.1|AV391679
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10772163|gb|AV622986.1|AV622986
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10778678|gb|AV635358.1|AV635358
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|34984847|gb|CF558764.1|CF558764
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|6547417|gb|AV393201.1|AV393201
EST:     AGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|6545428|gb|AV391212.1|AV391212
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10125857|gb|BE724561.1|BE724561
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10772132|gb|AV622955.1|AV622955
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|16431118|gb|BI996344.1|BI996344
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|7686988|gb|AW757636.1|AW757636
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|49462107|gb|BP090020.1|BP090020
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10782372|gb|AV639052.1|AV639052
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTGGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|49462032|gb|BP089945.1|BP089945
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|34987287|gb|CF561204.1|CF561204
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|15370641|gb|BI530067.1|BI530067
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|23365482|gb|BU653302.1|BU653302
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|22055775|gb|BQ812025.1|BQ812025
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|14229377|gb|BG848193.1|BG848193
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGAACCACCTCCACTGACGACAAGCGGTTGC
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAG-ACCACCTCCACTGACGACAAGCGGTTGC
EST: gi|10780185|gb|AV636865.1|AV636865
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|15695686|gb|BI719991.1|BI719991
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10773890|gb|AV624713.1|AV624713
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|34984848|gb|CF558765.1|CF558765
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10780580|gb|AV637260.1|AV637260
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|10769647|gb|AV620472.1|AV620472
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
EST: gi|49464431|gb|BP092344.1|BP092344
EST:     AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAG                         GAAGAAGAATGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA
genomic: AGCAAGATGGCCGGTGCGGTCCGCACCGGCGGCAAGGGCTCCGTCCGGAGgtgcggcggc ... caatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactgctttttggggtcaccgctgatgcgcgcggggcatattgcaatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG
                     cgctgat  putative branch site (score: 4)
        ttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcggcggctggaggcgcgctcggtgcactgctttttggggtcaccgctgatgcgcgcggggcatattgcaatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG