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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgcaggcatacgcaggattggacgccggggtgcccggccgggacggcaggtgggggaaggcagttgcggagcgagcgtgtctgaacgggctgtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTATGGAGTCTTCATCTGCCTGAACTGCGCGGGCATCCATCGGTCTTTGGGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98081
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO98081 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os10g42420.1 (Oryza sativa), 3'ss of exon 1
gtaagttgcaggcatacgcaggattggacgccggggtgcccggccgggacggcaggtgggggaaggcagttgcggagcgagcgtgtctgaacgggctgtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTATGGAGTCTTCATCTGCCTGAACTGCGCGGGCATCCATCGGTCTTTGGGAG
    ||||   |  |  |   || ||    |    ||     |  | ||       |     | |  ||| |   |       | | ||     ||     |||||| |||||||||| |||  |  ||||||||||||||||||||||||  | || || |||||| ||||| |  ||||| | | | |||| ||     | || |
---ggttgtgtgtgtgagagagactgtgttcttctgtaattcgt-gtgattttttttctcttacg--agtcgacta-tatttatatgtgcgtatgcctaatttgcagATGTGCTTCGACTGCAACGCCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCG

upper sequence: EDO98081 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G083546_T01 (Zea mays), 3'ss of exon 1
gtaagttgcaggcatacgcaggattggacgccggggtgcccggccgggacggcaggtgggggaaggcagttgcggagcgagcgtgtctgaacggg-ctgtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTATGGAGTCTTCATCTGCCTGAACTGCGCGGGCATCCATCG-GTCTTTGGGAG
                  |  | ||    ||| |  |||| | || |||             | | |   |||   ||  |    || || |    || ||||||||| |||||||||| |||  |  ||||||||| ||||||||||||||  | || ||  ||||| |||||||  ||||| ||| | |||| ||   | |||||  
---------------gtacgtgcttattggcctgcctgcctgccctggatct----------aggcctcctgcttcgccggatcctcagatcacatctctccttgcagATGTGCTTCGACTGCAACGCCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGACTGCTCGGCCGTCCACCGCAGCCTTGGGG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15704435|gb|BI728740.1|BI728740
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|23366005|gb|BU653825.1|BU653825
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|15369548|gb|BI528974.1|BI528974
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|16072701|gb|BI874697.1|BI874697
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|14229761|gb|BG848577.1|BG848577
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|8287287|gb|BE024846.1|BE024846
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|14229760|gb|BG848576.1|BG848576
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|16436996|gb|BM002216.1|BM002216
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|23363043|gb|BU650863.1|BU650863
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|14237609|gb|BG856425.1|BG856425
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|22068393|gb|BQ818332.1|BQ818332
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|23362874|gb|BU650694.1|BU650694
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|22073645|gb|BQ822983.1|BQ822983
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
EST: gi|22073669|gb|BQ823007.1|BQ823007
EST:     TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAG                         GTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT
genomic: TGGAGCGAGACCCGCTGTTCAAGAAGCTGCGGGCAAAGCCGGAGAACAAGgtaagttgca ... gtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caggtgggggaaggcagttgcggagcgagcgtgtctgaacgggctgtccttgcagGTGTGCTTCGATTGCCCCAACAAGAACCCGACCTGGGCCTCCGTGCCGTATGGAGTCTTCATCTGCCTGAACTGCGCGGGCATCCATCGGTCTTTGGGAG
                                           ctgtcctt  CT-rich tract