1 5' 3' | 2 5' 3' | 3 5' 3' |
...cacacacgaatgcacgcgcattttttgaacctctttgtgcgcctctgcacgccacttgcgacccgcgcatgcatatgcccaagtgccctcctacctgccgGTGTCGCATTACTTTCTTCTTCGCGCGCACACCGTGTGTGCGTACATGCGCGGCCATGACTCCCAGGCGCCGGAGGCCTTCACCGGCAGGGCCAGCAAGG
species | Chlamydomonas reinhardtii |
transcript | EDO98056 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTAACAGCGTTTCAACTGACAGCTTTGGCTCGCCTGCATACATG GTGTCGCATTACTTTCTTCTTCGCGCGCACACCGTGTGTGCGTACATGCGC
genomic: CGCTAACAGCGTTTCAACTGACAGCTTTGGCTCGCCTGCATACATGgtgagcggcg ... ctacctgccgGTGTCGCATTACTTTCTTCTTCGCGCGCACACCGTGTGTGCGTACATGCGC
tgcacgccacttgcgacccgcgcatgcatatgcccaagtgccctcctacctgccgGTGTCGCATTACTTTCTTCTTCGCGCGCACACCGTGTGTGCGTACATGCGCGGCCATGACTCCCAGGCGCCGGAGGCCTTCACCGGCAGGGCCAGCAAGG
ccctcctacctgcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacacgaatgcacgcgcattttttgaacctctttgtgcgcctctgcacgccacttgcgacccgcgcatgcatatgcccaagtgccctcctacctgccgGTGTCGCATTACTTTCTTCTTCGCGCGCACACCGTGTGTGCGTACATGCGCGGCCATGACTCCCAGGCGCCGGAGGCCTTCACCGGCAGGGCCAGCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-acacacg
- - - - - - cacgcgc
- - - - - - - - - - -tttttga
- - - - - - - - - - - - - - - -tctttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - cacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcata