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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttacagctggcgctggatgagcaaagagacagggcggggtcgcatgagcctccccgactgcctgaatgctgaacttgctgcgcctgtttgtttgccactgtgtagGCCAAGGCCTGGGCCGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97746
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22054138|gb|BQ811179.1|BQ811179
EST:     GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATG                         GCCAAGGCCTGGGCCGAG
genomic: GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATGgtgagcttac ... cactgtgtagGCCAAGGCCTGGGCCGAG
EST: gi|14228332|gb|BG847148.1|BG847148
EST:     GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATG                         GCCAAGGCCTGGGCCGAG
genomic: GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATGgtgagcttac ... cactgtgtagGCCAAGGCCTGGGCCGAG
EST: gi|22066441|gb|BQ816941.1|BQ816941
EST:     GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATG                         GCCAAGGCCTGGGCCGAG
genomic: GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATGgtgagcttac ... cactgtgtagGCCAAGGCCTGGGCCGAG
EST: gi|10778504|gb|AV635184.1|AV635184
EST:     GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATG                         GCCAAGGCCTGGGCCGAG
genomic: GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATGgtgagcttac ... cactgtgtagGCCAAGGCCTGGGCCGAG
EST: gi|10793202|gb|AV630568.1|AV630568
EST:     GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATG                         GCCAAGGCCTGGGCCGAG
genomic: GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATGgtgagcttac ... cactgtgtagGCCAAGGCCTGGGCCGAG
EST: gi|15371153|gb|BI530579.1|BI530579
EST:     GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATG                         GCCAAGGCCTGGGCCGAG
genomic: GACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATGgtgagcttac ... cactgtgtagGCCAAGGCCTGGGCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccccgactgcctgaatgctgaacttgctgcgcctgtttgtttgccactgtgtagGCCAAGGCCTGGGCCGAG
                                    tttgttt  TA-rich tract