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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactagcccactcgtctagaagaagcatgcttgcagcaaggggtcgacagcgtgcagctcactgactcaatgcagtagtctaggaaagtgattggaataaattcttacaatctgctgatgttcgcgtgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGCCTGGTGTGCCGCGCTGAGGAGAAGTCCATCGCCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97521
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10776071|gb|AV632751.1|AV632751
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10776705|gb|AV633385.1|AV633385
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAT                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|15369633|gb|BI529059.1|BI529059
EST:     TTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: TTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|22063033|gb|BQ815051.1|BQ815051
EST:     ATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: ATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10775195|gb|AV631875.1|AV631875
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10191248|gb|BE761324.1|BE761324
EST:     TTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: TTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|49458238|gb|BP086151.1|BP086151
EST:     CTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|8287140|gb|BE024699.1|BE024699
EST:     TTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: TTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|161792543|gb|FC081797.1|FC081797
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10780202|gb|AV636882.1|AV636882
EST:     CGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|161803217|gb|FC093236.1|FC093236
EST:     CTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|7615600|gb|AW721040.1|AW721040
EST:     TCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: TCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10776419|gb|AV633099.1|AV633099
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|22071312|gb|BQ820650.1|BQ820650
EST:     CAGTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CAGTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|49470465|gb|BP098326.1|BP098326
EST:     CACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|6544235|gb|AV390019.1|AV390019
EST:     GTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|9460442|gb|BE453233.1|BE453233
EST:     CTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|6544994|gb|AV390778.1|AV390778
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|22070078|gb|BQ819511.1|BQ819511
EST:     GCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10768789|gb|AV619614.1|AV619614
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10776309|gb|AV632989.1|AV632989
EST:     CACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|161819941|gb|FC107508.1|FC107508
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|6545968|gb|AV391752.1|AV391752
EST:     CGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAATGCCAACCGGGCCCGC
genomic: CGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10790625|gb|AV627991.1|AV627991
EST:     CGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10780617|gb|AV637297.1|AV637297
EST:     ACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: ACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10778577|gb|AV635257.1|AV635257
EST:     ACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: ACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|7686823|gb|AW757471.1|AW757471
EST:     CACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|7687556|gb|AW758202.1|AW758202
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|6542717|gb|AV388501.1|AV388501
EST:     CGGTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CAGTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10781507|gb|AV638187.1|AV638187
EST:     GCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10768838|gb|AV619663.1|AV619663
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|22057958|gb|BQ812795.1|BQ812795
EST:     CGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|7426764|gb|AW660937.1|AW660937
EST:     GTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|6541167|gb|AV386951.1|AV386951
EST:     CGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10773982|gb|AV624805.1|AV624805
EST:     CTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|10777204|gb|AV633884.1|AV633884
EST:     GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: GTCACTTCGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
EST: gi|161813946|gb|FC105586.1|FC105586
EST:     CGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAG                         GCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC
genomic: CGCGGTCACATATCACCATGATGCTCACCAAGTCCGCGCAGgtgactagcc ... tgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaaagtgattggaataaattcttacaatctgctgatgttcgcgtgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGCCTGGTGTGCCGCGCTGAGGAGAAGTCCATCGCCAAG
              aataaattcttacaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgactagcccactcgtctagaagaagcatgcttgcagcaaggggtcgacagcgtgcagctcactgactcaatgcagtagtctaggaaagtgattggaataaattcttacaatctgctgatgttcgcgtgccttgcagGCCGCTTTCAGCGGCAAGGTTGCCCGCCCGGCCAAGGCCAACCGGGCCCGCCTGGTGTGCCGCGCTGAGGAGAAGTCCATCGCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT