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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagatattgtgccgccgcagctccacccgggctcagccgcatgcaggcaggctggcgctcaccagctctcgtaatttggcgtcgcagGTGCTTGTTGGGGGCTCCCCGGAGTATTATGTGGAGCGCAAGCTGGGCAAGGGCGGCTTCGGCCAGGTCTATGTCGGCCGCAGAGTGTCGTCAACAAAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO97462
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14226523|gb|BG845355.1|BG845355
EST:     AGGGTGCTGCCAAGGAGGAGGAGGCCAGCACTGCGCCGCTGCCAGACAAG                         GTGCTTGTTGGGGGCTCCCCGGAGTATTATGTGGAGCGCAAGGCTGG-CAA
genomic: AGGGTGCTGCCAAGGAGGAGGAGGCCAGCACTGCGCCGCTGCCAGACAAGgcaagatatt ... ggcgtcgcagGTGCTTGTTGGGGGCTCCCCGGAGTATTATGTGGAGCGCAAG-CTGGGCAA
EST: gi|15371922|gb|BI531348.1|BI531348
EST:     GGGTGCTGGCCAAGGAGGAGGAGGCCAGCACTGCGCCGTTGCCAGACAAG                         GTGCTTGTTGGGG
genomic: GGGTGCTG-CCAAGGAGGAGGAGGCCAGCACTGCGCCGCTGCCAGACAAGgcaagatatt ... ggcgtcgcagGTGCTTGTTGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagccgcatgcaggcaggctggcgctcaccagctctcgtaatttggcgtcgcagGTGCTTGTTGGGGGCTCCCCGGAGTATTATGTGGAGCGCAAGCTGGGCAAGGGCGGCTTCGGCCAGGTCTATGTCGGCCGCAGAGTGTCGTCAACAAAGC
                       cgctcac  putative branch site (score: 3)
                                       taattt  TA-rich tract