1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtggtgggacgagaccctgatctggagctgcttgtggatttccaaaccctagcgatcgctgactcggtcgctcttgtccctattttatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGCAATATTTATTCGATGAAAAGGGGCGACGCTACCTCGAC
species | Chlamydomonas reinhardtii |
transcript | EDO96807 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTT CGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGCEST: gi|14231259|gb|BG850075.1|BG850075
genomic: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTTgtaagtggtg ... tatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGC
EST: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTT CGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGCEST: gi|14231512|gb|BG850328.1|BG850328
genomic: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTTgtaagtggtg ... tatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGC
EST: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTT CGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGCEST: gi|22072968|gb|BQ822322.1|BQ822322
genomic: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTTgtaagtggtg ... tatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGC
EST: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTT CGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGCEST: gi|14231513|gb|BG850329.1|BG850329
genomic: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTTgtaagtggtg ... tatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGC
EST: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTT CGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGCEST: gi|14231257|gb|BG850073.1|BG850073
genomic: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTTgtaagtggtg ... tatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGC
EST: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTT CGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGCEST: gi|15700184|gb|BI724489.1|BI724489
genomic: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTTgtaagtggtg ... tatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGC
EST: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTT CGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGC
genomic: CCCTTCAGCAGAGGAGGTCATCGCGCTGCGCAAGCAGTACCTCAGCCCTTgtaagtggtg ... tatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGC
tccaaaccctagcgatcgctgactcggtcgctcttgtccctattttatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGCAATATTTATTCGATGAAAAGGGGCGACGCTACCTCGAC
cgctgac putative branch site (score: 3)
ctcttgtccctatttt putative PPT
tattttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggtgggacgagaccctgatctggagctgcttgtggatttccaaaccctagcgatcgctgactcggtcgctcttgtccctattttatctcgcagCGCTGTTCTGGCACTTTAAAAAGCCTGTCATGATTGTGGAGGGCAAGATGCAATATTTATTCGATGAAAAGGGGCGACGCTACCTCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG