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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgggttgccccagccttccttgcaacccacaaacccggggctcatcacgcgtgatgtatggccgtgcagGAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAGGTGACCGTGGATATGGCGATCGGCGGCATGCGTGGCATCCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96721
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10791372|gb|AV628738.1|AV628738
EST:     CAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAG                         GAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
genomic: CAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAGgtgcgggttg ... ggccgtgcagGAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
EST: gi|23359352|gb|BU647172.1|BU647172
EST:     AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAG                         GAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
genomic: AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAGgtgcgggttg ... ggccgtgcagGAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
EST: gi|10789391|gb|AV645120.1|AV645120
EST:     AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAG                         GAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
genomic: AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAGgtgcgggttg ... ggccgtgcagGAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
EST: gi|10785585|gb|AV642257.1|AV642257
EST:     AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAG                         GAGCGCCTGAA
genomic: AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAGgtgcgggttg ... ggccgtgcagGAGCGCCTGAA
EST: gi|239841889|gb|GR283746.1|GR283746
EST:     AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAG                         GAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
genomic: AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAGgtgcgggttg ... ggccgtgcagGAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
EST: gi|239841885|gb|GR283742.1|GR283742
EST:     AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAG                         GAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
genomic: AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAGgtgcgggttg ... ggccgtgcagGAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
EST: gi|23365346|gb|BU653166.1|BU653166
EST:     AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAG                         GAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG
genomic: AGAACACCGACCTGAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAGgtgcgggttg ... ggccgtgcagGAGCGCCTGAAGGCCCTGAAGAAGGGCCATGGCTCCAAGTCGCTGGGCGAG