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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggttgcggacaagcatgtgcgttggcctccgaagccccagctgacgatcgtccctgctcccaaccctcccctccaaacgcttgaccccagCGACTACCTGTTCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96600
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22073113|gb|BQ822451.1|BQ822451
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|10779798|gb|AV636478.1|AV636478
EST:     CCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: CCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|49467422|gb|BP095335.1|BP095335
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|10778347|gb|AV635027.1|AV635027
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|15694356|gb|BI718661.1|BI718661
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGGTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|161796597|gb|FC082914.1|FC082914
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|22073093|gb|BQ822431.1|BQ822431
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCNAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|8933046|gb|BE227807.1|BE227807
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|10776378|gb|AV633058.1|AV633058
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|10778045|gb|AV634725.1|AV634725
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|22063901|gb|BQ815490.1|BQ815490
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|16432961|gb|BI998187.1|BI998187
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|6546326|gb|AV392110.1|AV392110
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|22073092|gb|BQ822430.1|BQ822430
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|15697029|gb|BI721334.1|BI721334
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG
EST: gi|16430540|gb|BI995766.1|BI995766
EST:     GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTA                         CGACTACCTGTTCAAG
genomic: GCGCGGCGGCCCCGAGGGACGCCCGCTGTAGCCAAGATGAACCCCGAGTAgtaagtggtt ... ttgaccccagCGACTACCTGTTCAAG