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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaggaccgcagctggcactgcgctttggtagggagaatggactgtcattttgccacggctcgcacctcttcttgctccacagGCGACCTGAACCCCAACAATGTGCTGCTGGTGCGCGCGCCCGGCACGCCGCTGGGGTTCTGCCTCAAGGTGTCGGACTTCGGGCTGTCGGTGCGCGTGGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96535
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14227422|gb|BG846238.1|BG846238
EST:     GCAGATCGCACGTGGGCTGCAGCACATCCACGAGAAGAACATCGTGCACG                         GCGACCTGAACCCCAACAATGTGCTGCTGGTGCGCGCGCCCGGCACGCCGC
genomic: GCAGATCGCACGTGGGCTGCAGCACATCCACGAGAAGAACATCGTGCACGgtgagtgagg ... tgctccacagGCGACCTGAACCCCAACAATGTGCTGCTGGTGCGCGCGCCCGGCACGCCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagggagaatggactgtcattttgccacggctcgcacctcttcttgctccacagGCGACCTGAACCCCAACAATGTGCTGCTGGTGCGCGCGCCCGGCACGCCGCTGGGGTTCTGCCTCAAGGTGTCGGACTTCGGGCTGTCGGTGCGCGTGGG
                                   cacctcttcttgctcc  CT-rich tract
                 tcatttt  TA-rich tract