Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaggtttgccggcatcaacgctcggcgatgtgctagtcgccagcacctcatgtgacctcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTCAAGACTGCTAAGCCTCGCCTGGTTGTGCTGGGTTCCGGCTGGGGCGCCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO96450
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14234225|gb|BG853041.1|BG853041
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|10785794|gb|AV642466.1|AV642466
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|239842069|gb|GR283926.1|GR283926
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|15369093|gb|BI528519.1|BI528519
EST:     CCGTCAACGATCAGTGACGACTGCGAGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCGTCAACGATCAGTGACGACTGCG-GTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|10788743|gb|AV626463.1|AV626463
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|15700427|gb|BI724732.1|BI724732
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|10788305|gb|AV626025.1|AV626025
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|10792082|gb|AV629448.1|AV629448
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|14234224|gb|BG853040.1|BG853040
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|14234866|gb|BG853682.1|BG853682
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
EST: gi|239842068|gb|GR283925.1|GR283925
EST:     CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCG                         GAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC
genomic: CCCGTCAACGATCAGTGACGACTGCGGTCATGACACCGCCGGCGAAGTCGgtaagcaggt ... tcaattgcagGAGTCTTCGAGCCCGGTATATACCACCATGAGCCTTGATGGCCAAAACCTC