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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccgggtgatgcggccgtcggcacgttgcggactcccaattgacgaggacttttgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA

Basic information

species Chlamydomonas reinhardtii
transcript EDO96236
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784272|gb|AV640944.1|AV640944
EST:     ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAG                         GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
genomic: ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAGgtaccgggtg ... tgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
EST: gi|10787146|gb|AV643818.1|AV643818
EST:     ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAG                         GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
genomic: ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAGgtaccgggtg ... tgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
EST: gi|10784247|gb|AV640919.1|AV640919
EST:     ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAG                         GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
genomic: ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAGgtaccgggtg ... tgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
EST: gi|49467137|gb|BP095050.1|BP095050
EST:     CGCCGGTCCGATTGTCATTGGCCAG                         GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
genomic: CGCCGGTCCGATTGTCATTGGCCAGgtaccgggtg ... tgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
EST: gi|49469934|gb|BP097795.1|BP097795
EST:     ACATCAACACCATCATGATTATTGGCGCCGGTCCGATNGTCATTGGCCAG                         GCTTGCGAGTTTGACTACTCGGGCACCCAGGC
genomic: ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAGgtaccgggtg ... tgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAGGC
EST: gi|49470671|gb|BP098532.1|BP098532
EST:     ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAG                         GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
genomic: ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAGgtaccgggtg ... tgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
EST: gi|49468466|gb|BP096327.1|BP096327
EST:     ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAG                         GCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
genomic: ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAGgtaccgggtg ... tgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
EST: gi|49468806|gb|BP096667.1|BP096667
EST:     ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAG                         GCTTGCGAGTTTGACTACTCGGGCACCCAG
genomic: ACATCAACACCATCATGATTATTGGCGCCGGTCCGATTGTCATTGGCCAGgtaccgggtg ... tgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcggccgtcggcacgttgcggactcccaattgacgaggacttttgcgtcgcagGCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
                             aattgac  putative branch site (score: 3)
                                         cttttgc  putative PPT