1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taggagtatataaatatccctatatttatatacccgaaggggaaggggacgtcctgtaaggggaaaggataaagtatattattattaacaaggaatcgtgGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGTGCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCT
species | Chlamydomonas reinhardtii |
transcript | DAA00922 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATC GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCEST: gi|16432092|gb|BI997318.1|BI997318
genomic: CAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATCttcgcaaata ... aggaatcgtgGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATC
EST: CAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATC GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATC
genomic: CAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATCttcgcaaata ... aggaatcgtgGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATC
gggacgtcctgtaaggggaaaggataaagtatattattattaacaaggaatcgtgGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGTGCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCT
tattaac putative branch site (score: 1)
aaaggataaagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggagtatataaatatccctatatttatatacccgaaggggaaggggacgtcctgtaaggggaaaggataaagtatattattattaacaaggaatcgtgGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGTGCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCT
- - agtatat
- - - - -ataaata
- - - - - - - - - - tatattt
- - - - - - - - - - - - - -atatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaca