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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacaagataaatcataaaacttcgaaacacttgtcttcaaagaacaaaagcatgataataatgattcgttcttttcatttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGATTAGCTTATGCAATCGATCATCCTGAGCCTCTCCTGCATTTTGCACTTA

Basic information

species Arabidopsis thaliana
transcript AT5G66600.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429882|gb|EG472474.1|EG472474
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429885|gb|EG472477.1|EG472477
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429898|gb|EG472490.1|EG472490
EST:     AAGCGATACAAAGTTCGATTCTTGGGCGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429875|gb|EG472467.1|EG472467
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429890|gb|EG472482.1|EG472482
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429888|gb|EG472480.1|EG472480
EST:     AAGCGATACAAAGTTCGATTTTTGGGTGCAAAATGTTTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429897|gb|EG472489.1|EG472489
EST:     AAGCGATACAAAGTTCGATTCTTGGGCGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429899|gb|EG472491.1|EG472491
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429876|gb|EG472468.1|EG472468
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429878|gb|EG472470.1|EG472470
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429887|gb|EG472479.1|EG472479
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429896|gb|EG472488.1|EG472488
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429893|gb|EG472485.1|EG472485
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429873|gb|EG472465.1|EG472465
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429874|gb|EG472466.1|EG472466
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429880|gb|EG472472.1|EG472472
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429891|gb|EG472483.1|EG472483
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429889|gb|EG472481.1|EG472481
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAG                         TGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
EST: gi|116429892|gb|EG472484.1|EG472484
EST:     AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTTTCATCCTGGACAG                         TGGCTTAGACTACTATTTGTTTCGAGGAAATTCAAAGCAGGGGATGAAAGA
genomic: AAGCGATACAAAGTTCGATTCTTGGGTGCAAAATGTCTCATCCTGGACAGgtacacaaga ... tttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttcaaagaacaaaagcatgataataatgattcgttcttttcatttttcttagTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGGATGAAAGATTAGCTTATGCAATCGATCATCCTGAGCCTCTCCTGCATTTTGCACTTA
                                ttcgttcttttcattt  CT-rich tract
                   atgataataatgatt  TA-rich tract