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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttaccattgatctgtgaaacacttcaaaaaatcctttaatgctattaaaactcaagtctctgcgtctttgtttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAAGAAGAGTACATAAGAATGAACTTAAGCATACGCAAGCAGAGAATCCTAT

Basic information

species Arabidopsis thaliana
transcript AT5G66600.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429882|gb|EG472474.1|EG472474
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGA
EST: gi|116429885|gb|EG472477.1|EG472477
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429898|gb|EG472490.1|EG472490
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429875|gb|EG472467.1|EG472467
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429890|gb|EG472482.1|EG472482
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429888|gb|EG472480.1|EG472480
EST:     AGCCTTTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTTGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429897|gb|EG472489.1|EG472489
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429899|gb|EG472491.1|EG472491
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTGTATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429879|gb|EG472471.1|EG472471
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGGGTATATACCCCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429876|gb|EG472468.1|EG472468
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429878|gb|EG472470.1|EG472470
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429887|gb|EG472479.1|EG472479
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAA
EST: gi|116429896|gb|EG472488.1|EG472488
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429893|gb|EG472485.1|EG472485
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429873|gb|EG472465.1|EG472465
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGA
EST: gi|116429874|gb|EG472466.1|EG472466
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429880|gb|EG472472.1|EG472472
EST:     AGCCTCTCCTGCATTTCGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429891|gb|EG472483.1|EG472483
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429889|gb|EG472481.1|EG472481
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
EST: gi|116429892|gb|EG472484.1|EG472484
EST:     AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCG                         GTTGGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA
genomic: AGCCTCTCCTGCATTTTGCACTTACTTCAGGCAGCCACTCCGATCCCGCGgtacttacca ... tttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaatcctttaatgctattaaaactcaagtctctgcgtctttgtttcaaccagGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGCTTGAAACGTCGAAAGAAGAGTACATAAGAATGAACTTAAGCATACGCAAGCAGAGAATCCTAT
        ctttaat  putative branch site (score: 4)
                                       tctttgtttc  putative PPT
         tttaatgctattaaaa  TA-rich tract