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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagggcatattcttggtctcgattatgtctggaatgatgatctttttggttagtttcactgagtaacacttttgggtctctctgcagATATGAAGGTCTCAGGGGTTTCTACAGGGGACTAACGGCTAATCTTTTGAAAAATGTACCTGCGTCTTCCATCACATTCATCGTCTATGAAAACGTTCTG

Basic information

species Arabidopsis thaliana
transcript AT5G66380.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19740760|gb|AU226113.1|AU226113
EST:     GGAATCCCAAGATATATAGACAGCTTACATGTCATCAGAGAAACCGCGAG                         ATATGAAGGTCTCAGGGGTTTCTACAGGGGACTAACGGCTAATCTTTTGAA
genomic: GGAATCCCAAGATATATAGACAGCTTACATGTCATCAGAGAAACCGCGAGgtcagggcat ... ctctctgcagATATGAAGGTCTCAGGGGTTTCTACAGGGGACTAACGGCTAATCTTTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgatgatctttttggttagtttcactgagtaacacttttgggtctctctgcagATATGAAGGTCTCAGGGGTTTCTACAGGGGACTAACGGCTAATCTTTTGAAAAATGTACCTGCGTCTTCCATCACATTCATCGTCTATGAAAACGTTCTG
                            gagtaac  putative branch site (score: 2)
                                            tctctctgc  putative PPT
       atcttttt  TA-rich tract