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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttggaatcttatctgttacctttccatatatcgaccatgtgatttattaaccagtcgtttagtgacatgaaatattgatttgaagGTCTGGAACAATGATGTTCGGTTCTACCGCGTCAAAGATTCTTCTGGGAACCCAATCGCTTACTTTTACTTTGATCCATACTCTCGCCCGTCAGAGAAAA

Basic information

species Arabidopsis thaliana
transcript AT5G65620.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86065054|gb|DR360811.1|DR360811
EST:     CTAAGACACTTTTTGGAATTGATATTGAACCAGCAGATGGTTTAGCTCCG                         GTCTGGAACAATGATGTTCGGTTCTACCGCGTCAAAGATTCTTCTGGGAAC
genomic: CTAAGACACTTTTTGGAATTGATATTGAACCAGCAGATGGTTTAGCTCCGgtaaatttgg ... tgatttgaagGTCTGGAACAATGATGTTCGGTTCTACCGCGTCAAAGATTCTTCTGGGAAC
EST: gi|86065055|gb|DR360812.1|DR360812
EST:     CTAAGACACTTTTTGGAATTGATATTGAACCAGCAGATGGTTTAGCTCCG                         GTCTGGAACAATGATGTTCGGTTCTACCGCGTCAAAGATTCTTCTGGGAAC
genomic: CTAAGACACTTTTTGGAATTGATATTGAACCAGCAGATGGTTTAGCTCCGgtaaatttgg ... tgatttgaagGTCTGGAACAATGATGTTCGGTTCTACCGCGTCAAAGATTCTTCTGGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgaccatgtgatttattaaccagtcgtttagtgacatgaaatattgatttgaagGTCTGGAACAATGATGTTCGGTTCTACCGCGTCAAAGATTCTTCTGGGAACCCAATCGCTTACTTTTACTTTGATCCATACTCTCGCCCGTCAGAGAAAA
                                    atgaaatattgattt  TA-rich tract