1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaagcacagaaatttatttaaactgctctttaatatttttgcgcagttgcttaatgatagtgtaaggtttgcttgctgttgccataatcgttactttgtttttgttgcagGCAACACAGGAGTTGCGGTTACACTCTACGATTCTAGAAAGTCGAGTGTATCCAGGATCGAAAAAGAAGCTGGTATCAAATTTGAGCACCTTGCTGCACC
species | Arabidopsis thaliana |
transcript | AT5G62190.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACGTGAAGTTGAAGCATATATTCATCGTTCAGGCCGAACAGGAAGAGCTG GCAACACAGGAGTTGCGGTTACACTCTACGEST: gi|164021102|gb|ES126960.1|ES126960
genomic: ACGTGAAGTTGAAGCATATATTCATCGTTCAGGCCGAACAGGAAGAGCTGgtaaagcaca ... tttgttgcagGCAACACAGGAGTTGCGGTTACACTCTACG
EST: ACGTGAAGTTGAAGCATATATTCATCGTTCAGGCCGAACAGGAAGAGCTG GCAACACAGGAGTTGCGGTTACACTCTACGATTCTEST: gi|47828150|gb|CK117834.1|CK117834
genomic: ACGTGAAGTTGAAGCATATATTCATCGTTCAGGCCGAACAGGAAGAGCTGgtaaagcaca ... tttgttgcagGCAACACAGGAGTTGCGGTTACACTCTACGATTCT
EST: ACGTGAAGTTGAAGCATATATTCATCGTTCAGGCCGAACAGGAAGAGCTG GCAACACAGGAGTTGCGGTTACACTCTACGATTCTAGAAAGTCGAGTGTAT
genomic: ACGTGAAGTTGAAGCATATATTCATCGTTCAGGCCGAACAGGAAGAGCTGgtaaagcaca ... tttgttgcagGCAACACAGGAGTTGCGGTTACACTCTACGATTCTAGAAAGTCGAGTGTAT
gatagtgtaaggtttgcttgctgttgccataatcgttactttgtttttgttgcagGCAACACAGGAGTTGCGGTTACACTCTACGATTCTAGAAAGTCGAGTGTATCCAGGATCGAAAAAGAAGCTGGTATCAAATTTGAGCACCTTGCTGCACC
ctttgttttt CT-rich tract
tttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcacagaaatttatttaaactgctctttaatatttttgcgcagttgcttaatgatagtgtaaggtttgcttgctgttgccataatcgttactttgtttttgttgcagGCAACACAGGAGTTGCGGTTACACTCTACGATTCTAGAAAGTCGAGTGTATCCAGGATCGAAAAAGAAGCTGGTATCAAATTTGAGCACCTTGCTGCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC