Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatgacttcgccatttctaaatactcatggttgtatctatatactctgcttgcagtacacaaacttggatcttgaaaacgaaaattcacatatttgacctgtttctttctttttttgatgagcaaatcctgtttctgggatttatctgtggtttgatctgacttgtagtaacttttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTTGTGTCTCCATTCGCCATAACATTCACAAGAATCAAACTCAATATCTTCA

Basic information

species Arabidopsis thaliana
transcript AT5G61410.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124822656|gb|EH907522.1|EH907522
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGA
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGA
EST: gi|124752951|gb|EH843081.1|EH843081
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATC
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATC
EST: gi|125013421|gb|EL085690.1|EL085690
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAG
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAG
EST: gi|86081477|gb|DR377234.1|DR377234
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
EST: gi|125010123|gb|EL082392.1|EL082392
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGAT
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGAT
EST: gi|116452333|gb|EG494925.1|EG494925
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         ------TTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
EST: gi|86081612|gb|DR377369.1|DR377369
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
EST: gi|86083063|gb|DR378822.1|DR378822
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
EST: gi|124851553|gb|EH935990.1|EH935990
EST:     AGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
EST: gi|116420525|gb|EG463117.1|EG463117
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
EST: gi|125203727|gb|EL218681.1|EL218681
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATG
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATG
EST: gi|116445743|gb|EG488335.1|EG488335
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
EST: gi|124857564|gb|EH942001.1|EH942001
EST:     AAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
EST: gi|124822200|gb|EH907066.1|EH907066
EST:     AAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
EST: gi|125117561|gb|EL166653.1|EL166653
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGAT
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGAT
EST: gi|125044328|gb|EL116597.1|EL116597
EST:     AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAG                         GAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT
genomic: AGCTGTGTAATGTGAAGCAACAGCAAGCGAAAAGACTCTGTTAAACTTAGgttaatgact ... tttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttctgggatttatctgtggtttgatctgacttgtagtaacttttatttcagGAACAGTTAAAAAGTGAATGACGATCACCAGAAGTCCCAGATGTTGTCGTTGTGTCTCCATTCGCCATAACATTCACAAGAATCAAACTCAATATCTTCA
                                     tagtaac  putative branch site (score: 1)
                                           cttttatttc  CT-rich tract
                                     tagtaacttttattt  TA-rich tract