1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcttcatctttcttccttcatcttttcttccttcttagtcacttgcagtggccaagactgatcttatttcttcaaactaggaaagatactttgagaatgattacattgttagatcacacaaaacactaatgttatgctcatgaggttcttcgtgctgtcttttaatctcagCCTTGAGGAGAGACAAAGGGCCGAAAAGAGGACCAGAGAGACAAAGGGACAAAAGTTCACTCCAAGATGGTTCGATCTAACGGATGAGATCACACCTACT
species | Arabidopsis thaliana |
transcript | AT5G59420.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGACCTTTCTAAAGCTGGTTCCGAGAAACACAG CCTTGAGGAGAGACAAAGGGCCGAAAAGAGGACCAGAGAGACAAAGGGACAEST: gi|164044823|gb|ES162484.1|ES162484
genomic: TGACCTTTCTAAAGCTGGTTCCGAGAAACACAGgttcttcatc ... ttaatctcagCCTTGAGGAGAGACAAAGGGCCGAAAAGAGGACCAGAGAGACAAAGGGACA
EST: TATTCCCTTGAGCAGGGTGACCTTTCTAAAGCTGGTTCCGAGAAACACAG CCTTGAGGAGAGAEST: gi|124986376|gb|EL058902.1|EL058902
genomic: TATTCCCTTGAGCAGGGTGACCTTTCTAAAGCTGGTTCCGAGAAACACAGgttcttcatc ... ttaatctcagCCTTGAGGAGAGA
EST: TATTCCCTTGAGCAGGGTGACCTTTCTAAAGCTGGTTCCGAGAAACACAG CCTTGAGGAGAGACAAAGGGCCGAAAAGAGGACCAGAGAGACAAAGGGACA
genomic: TATTCCCTTGAGCAGGGTGACCTTTCTAAAGCTGGTTCCGAGAAACACAGgttcttcatc ... ttaatctcagCCTTGAGGAGAGACAAAGGGCCGAAAAGAGGACCAGAGAGACAAAGGGACA
cacaaaacactaatgttatgctcatgaggttcttcgtgctgtcttttaatctcagCCTTGAGGAGAGACAAAGGGCCGAAAAGAGGACCAGAGAGACAAAGGGACAAAAGTTCACTCCAAGATGGTTCGATCTAACGGATGAGATCACACCTACT
ctgtctttt CT-rich tract
taatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttcatctttcttccttcatcttttcttccttcttagtcacttgcagtggccaagactgatcttatttcttcaaactaggaaagatactttgagaatgattacattgttagatcacacaaaacactaatgttatgctcatgaggttcttcgtgctgtcttttaatctcagCCTTGAGGAGAGACAAAGGGCCGAAAAGAGGACCAGAGAGACAAAGGGACAAAAGTTCACTCCAAGATGGTTCGATCTAACGGATGAGATCACACCTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA