Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttcaaggctgcttctcagatatcagtgtctttagagttggatatgtttccagtatgatttctgataggtcattcgattgtttctatatctgaggcctgtgcatatcatatcagtatgctaacataaaatttctcttcaattggcagTCCAGATGATTGGGAGTGTTTCCTACACTATCTCGGCTGTCTGCTTGAAGATGACAGCATCTGGAAATACTTTGACAATATTGATCAAATTCATCCGACA

Basic information

species Arabidopsis thaliana
transcript AT5G58450.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58450.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA11G29640.1 (Glycine max), 3'ss of exon 8
gtatgttttcaaggctgcttctcagatatcagtgtctttagagttggatatgtttccagtatgatttctgataggtcattcgattgtttctatatctgaggcctgtgcatatcatatcagtatgctaacataaaatttctcttcaattggcagTCCAGATGATTGGGAGTGTTTCCTACACTATCTCGGCTGTCTGCTTGAAGATGACAGCATCTGGAAATACTTTGACAATATTGATCAAATTCATCCGACA
                                                  ||||||| | || |   || ||   |  ||   || |||  || ||| |  | | ||     |   |   | | | |    | | | | || ||| |||||||||||||||| |||||| ||||||| || || || || ||| |||| |||||||||||||| |||    |    |    || ||||| | |||||||  ||
--------------------------------------------------tgtttcctgaattaaa-ctcattcatagttttctt-tttgcatgtcttatacttttgttcccctgctttttctaccattg-atattgtttcatcatttggcagTCCAGATGACTGGGAGAGTTTCCTTCATTACCTAGGTTGTTTGCTAGAAGATGACAGCATTTGGTGTGATGAGGTTGTTAATGATCCAGTTCATCCCCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcctgtgcatatcatatcagtatgctaacataaaatttctcttcaattggcagTCCAGATGATTGGGAGTGTTTCCTACACTATCTCGGCTGTCTGCTTGAAGATGACAGCATCTGGAAATACTTTGACAATATTGATCAAATTCATCCGACA
                        tgctaac  putative branch site (score: 1)
                                     tttctcttc  putative PPT
                           taacataaaatttct  TA-rich tract