Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactcgccagtatgacttcacatagtttacgtatgtaacttaactatattcagtaagtttagcatccttggtttatctagctagattgctatatgcaaactactcttttattaagttggcggttttatctgcagTAATTCATGGTGCTGGGGGAATGCATATGGTTGATCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATTCCAGTCATTTTCGATGA

Basic information

species Arabidopsis thaliana
transcript AT5G57590.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57590.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA13G01170.1 (Glycine max), 3'ss of exon 10
gtacactcgccagtatgacttcacatagtttacgtatgtaacttaactatattcagtaagttta-gcatccttggtttatctagctagattgctatatgcaaactactc-ttttattaagttggcggttttatctgcagTAATTCATGGTGCTGGGGGAATGCATATGGTTGATCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATTCCAGTCATTTTCGATGA
                                    | |||   || | | ||||||   | |  | ||  |    ||| ||   |       | | || | | |  || | | |||  |     |   |  | || ||| || || |||||||| |||||||||||||||||||| ||||| || || ||  | || |||||||| |||| ||||||||||||||| || || |||||
------------------------------------tctaaa--aattgt-ttcagtggctctctggatattctaattaacttattttcaccttttctggacattgatcatctcatttggggcctgagctgttatgtagTTATCCAAGGTGCTGGTGGAATGCATATGGTTGATCCACTTTTTCAGCGTGTGCTTGTTAATGAGTGTCGGAGTAGAAAAATTCCAGTAATCTTTGATGA

upper sequence: AT5G57590.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv11s0052g01390.t01 (Vitis vinifera), 3'ss of exon 9
gtacactcgccagtatgacttcacatagtttacgtatgtaacttaactatattcagtaagtttagcatccttggtttatctagctagattgctatatgcaaactactcttttattaagttggcggttttatctgcagTAATTCATGGTGCTGGGGGAATGCATATGGTTGATCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATTCCAGTCATTTTCGATGA
                                 | |||   |   | || |  ||     || ||  | ||   || |  || ||    |  | | | |||    ||  || | |||  |  | ||||    | ||||  | |||||| |||| |||||||||||| ||||||| ||||| ||| ||||  | ||||||||||| || |   |||||||||| || || || |||||
------------------------------cctggatgggccgggatta-agccatctgattcagtgtactctattgagttacctga--tagtgtttccaagtatctacttcaataatgtttctgttt----ttcagTTGTACATGGTTCTGGTGGAATGCATATGATTGATCCACTTTTTCAAAGAGTACTTGTGAATGAGTGTCGAAGCCGAAAAATTCCTGTTATCTTTGATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctagattgctatatgcaaactactcttttattaagttggcggttttatctgcagTAATTCATGGTGCTGGGGGAATGCATATGGTTGATCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATTCCAGTCATTTTCGATGA
                                           ttttatct  CT-rich tract
                     tactcttttattaa  TA-rich tract