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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcttataaacacattgagctaaaacatttcattaagaaatagttttgacttaaagtgcaagtaatgtcagGTACTACGAGATGGACCAAACCACGGTTATGGTATATTAGTCTCTGCTGTGCCTAAAGACAGCAATGCCTTTTACTCGCTTCGTGACCCGTCTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G51460.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164019218|gb|ES196442.1|ES196442
EST:     TTCTTCCAATCTATGTTGGGGATGATCGAACAGACGAAGATGCATTTAAG                         GTATTACGAGATGGACCAAACCACGGTTATGGTA
genomic: TTCTTCCAATCTATGTTGGGGATGATCGAACAGACGAAGATGCATTTAAGgtttgttctt ... gtaatgtcagGTACTACGAGATGGACCAAACCACGGTTATGGTA
EST: gi|47828165|gb|CK117849.1|CK117849
EST:     TTCTTCCAATCTATGTTGGGGATGATCGAACAGACGAAGATGCATTTAAG                         GTATTACGAGATGGACCAAACCACGGTTATGGTATATTAGTCTCTGCTGTG
genomic: TTCTTCCAATCTATGTTGGGGATGATCGAACAGACGAAGATGCATTTAAGgtttgttctt ... gtaatgtcagGTACTACGAGATGGACCAAACCACGGTTATGGTATATTAGTCTCTGCTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagctaaaacatttcattaagaaatagttttgacttaaagtgcaagtaatgtcagGTACTACGAGATGGACCAAACCACGGTTATGGTATATTAGTCTCTGCTGTGCCTAAAGACAGCAATGCCTTTTACTCGCTTCGTGACCCGTCTGAG
                           ttttgac  putative branch site (score: 3)
     aaaacatttcattaag  TA-rich tract