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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttatcaagcattccatataaattatattcctttttcattacccttactgattaggtttttcatacaatttgacagGAGCCAGATTTAAGGATGCATTCCAAGACCCCAGCACGTATATGGCTGTAAAGCCTTTTTTCGAT

Basic information

species Arabidopsis thaliana
transcript AT5G49820.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038682|gb|DR334437.1|DR334437
EST:     AGAAAAGATATTCACTTTTCCATGGGTGGATGATCGGCCAGTGATGCTTG                         GAGC-AGATTTAAGGATGCATT
genomic: AGAAAAGATATTCACTTTTCCATGGGTGGATGATCGGCCAGTGATGCTTGgtatgtgtta ... aatttgacagGAGCCAGATTTAAGGATGCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatattcctttttcattacccttactgattaggtttttcatacaatttgacagGAGCCAGATTTAAGGATGCATTCCAAGACCCCAGCACGTATATGGCTGTAAAGCCTTTTTTCGAT
                        tactgat  putative branch site (score: 2)
                                   tttttcatacaattt  TA-rich tract