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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctgcttctactctccaagaaaaatattaaatagtaagttgtgttttatcattgttcagaaaataacttgcaagtttgtttaattgtagTTCGTTGATGGCCACCGTAACATGTCTAGTGGGTCTGCACTATGGCCATATTATCATCCACTTCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G47900.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435444|gb|EG478036.1|EG478036
EST:     CCTTTTGACCCCGAAGGCCTCTTAAG                         TTCGTTGATGGCCACCGTAACATGTCTAGTGGGTCTGCACTATGGCCATAT
genomic: CCTTTTGACCCCGAAGGCCTCTTAAGgtctctgctt ... ttaattgtagTTCGTTGATGGCCACCGTAACATGTCTAGTGGGTCTGCACTATGGCCATAT
EST: gi|116435442|gb|EG478034.1|EG478034
EST:     TGGTGTCAAGCGCCTTTTGACCCCGAAGGCCTCTTAAG                         TTCGTTGATGGCCACCGTAACATGTCTAGTGGGTCTGCACTATGGCCATAT
genomic: TGGTGTCAAGCGCCTTTTGACCCCGAAGGCCTCTTAAGgtctctgctt ... ttaattgtagTTCGTTGATGGCCACCGTAACATGTCTAGTGGGTCTGCACTATGGCCATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagttgtgttttatcattgttcagaaaataacttgcaagtttgtttaattgtagTTCGTTGATGGCCACCGTAACATGTCTAGTGGGTCTGCACTATGGCCATATTATCATCCACTTCAAG
                                        tttgttt  CT-rich tract
                                     aagtttgtttaatt  TA-rich tract