Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttctaatgaattttcgcagcattgagtatgttgtaactaaacagaattaactgatcttagtttttaaacctcagGGTCTCAAGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTATTTTACG

Basic information

species Arabidopsis thaliana
transcript AT5G37850.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125136097|gb|EL176127.1|EL176127
EST:     TAGGAGGCATTCTATTACTTATCGGAAGCCATCAGAAAGAAAAG                         GGTCTCAAGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTAT
genomic: TAGGAGGCATTCTATTACTTATCGGAAGCCATCAGAAAGAAAAGgtaggtttct ... taaacctcagGGTCTCAAGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTAT
EST: gi|86083486|gb|DR379245.1|DR379245
EST:     TTACTATAGGAGGCATTCTATTACTTATCGGAAGCCATCAGAAAGAAAAG                         GGTCTCAAGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTAT
genomic: TTACTATAGGAGGCATTCTATTACTTATCGGAAGCCATCAGAAAGAAAAGgtaggtttct ... taaacctcagGGTCTCAAGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgagtatgttgtaactaaacagaattaactgatcttagtttttaaacctcagGGTCTCAAGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTATTTTACG
                                         ttttt  CT-rich tract
                                  atcttagtttttaaa  TA-rich tract