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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaacaatatgtctcttgtttttttctttctatattaaggaagatatatgacagtcacagaagtagtttgggttcccagtttttctttctgactcttgcgattttgtcttgtgtttgattgttttttatttccttccacagAACGAAAGCCATATAACGCTGCATGACCTGAAAGGCTCAAAGCTCTCTGGAAACGTCTTCAACATCCTTTTTAATCTAAACAAATTTATGGCATTTGAAA

Basic information

species Arabidopsis thaliana
transcript AT5G28850.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28850.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 3'ss of exon 10
-------gttcaacaatatgtctcttgtttttt---tctttctatattaaggaagatatatgacagtcacagaagtagtttgggttcc-cagtttttctttctgactcttgcgattttgtcttgtgtttgattgttttttatttccttccacagAACGAAAGCCATATAACGCTGCATGACCTGAAAGGCTCAAAGCTCTCTGGAAACGTCTTCAACATCCTTTTTAATCTAAACAAATTTATGGCATTTGAAA
        ||  |||  ||   |  ||  ||||    || | |  |  |  | | || |  |   ||    ||| |        |    ||   || || | |  |      |   ||    ||  ||||||   | |||  ||  |||||||||||||  || |  | || || |  ||| | ||| | |  || ||||| || ||  | ||||||||||| || ||||| ||||||||||||||||||||||
gtagcatcttggacagaattattgatgcattttaggcctgtttggaacagtgga-atgtcagcatgttgaggaattgcaccatttaatgcaaaattcctgtgttccaaacaagtccttaaactgaatttgataaatcttttctt--ttccacagAACGAGTGCTACTTTACACTACGGGACTTAAAACGGTGTAAACTCTCAGGGAATATATTCAACATCCTATTCAATCTCAACAAATTTATGGCATTTGAAA

upper sequence: AT5G28850.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: PP1S7_163V6.1 (Physcomitrella patens), 3'ss of exon 10
gttcaacaatatgtctcttgtttttttctttctatattaaggaagatatatgacagtcacagaagtagtttgggttcccagtttttctttctgactcttgcgattttgtcttgtgtttgattgttttttatttccttccacagAACGAAAGCCATATAACGCTGCATGACCTGAAAGGCTCAAAGCTCTCTGGAAACGTCTTCAACATCCTTTTTAATCTAAACAAATTTATGGCATTTGAAA
         || |  | |   |  | |||| ||| |||  ||  | |  |  |   ||    || | | |   |    ||  |||   | ||   |  || ||  || ||     |   | |  |  |    ||   |  ||||| ||| | |   | || || |  ||| | ||  | |  ||  | ||||||||| ||||||| ||||||||||| || ||||||||  | || ||||| |
--------gtaagcgtttgagtagtctctt-ctacatt--ggttgcttcactat--tcgactaaatgggtctcgcattca--tttcactgctagttaatgtgaagttttcac---tgaaacttatcctctactctggctgcagAATGAAGGACGGTTGACACTTCGGGACTTAAAGCGATGCAAATTATCTGGAAACTTCTTCAATATCCTTTTTAACCTCAACAAATTCGTAGCTTTTGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgactcttgcgattttgtcttgtgtttgattgttttttatttccttccacagAACGAAAGCCATATAACGCTGCATGACCTGAAAGGCTCAAAGCTCTCTGGAAACGTCTTCAACATCCTTTTTAATCTAAACAAATTTATGGCATTTGAAA
                                ttgttttttatttcct  CT-rich tract
                           tttgattgttttttat  TA-rich tract