Sequence
atgc intronic sequence ATGC exonic sequencegtgaatttttcgtttctatattgtatatgaatgagtaaataacttccagttactgactaattttatgtcgtttgtaactttacctgatagGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGA
Basic information
species | Arabidopsis thaliana |
transcript | AT5G26780.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA02G38160.2 (Glycine max), 3'ss of exon 9
----------gtgaattt---ttcgtttctatattgtatatgaatgagtaaataacttccagttactgactaattttatgtcgtttgtaactttacctgatagGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGA
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tgctttgagggtcgagttaggctcatttttttttcatttgtaaccattt---tgaagttgggtaacctgaaaaagttctttatttgctgaatccatcctacagGTGTTGTATGACTATGAAGACAGAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTTCTGGCTTAGCAGTTGCACTGA
upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA14G36280.2 (Glycine max), 3'ss of exon 9
----gtgaatttttcgtttc-tatattgtatatgaatgagtaaataacttccagtt-----actgactaattttatgtcgtttgtaactttacctgatagGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGA
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tgctttgagggttgagttaggctcattttgttttcatttgtaaccatttcaaagttgggtaacctgaaaaaattctttattttctgaatccatcttacagGTGTTGTATGACTATGAAGACAAAATAAACCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTTCAGGCTTAGCAGTTGCACTGA
upper sequence: AT5G26780.3 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 9
-------------gtgaatttttcgtttctatattgtatatgaa-tgagtaaataacttccagttactgactaattttatgtcgtttgtaactttacctgatagGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGA
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tttttccccaattggttatggtttctttcagttttgaaagcaaaattcataagtgaatt---atctggcacacatttttcaatggttg-aattccatcctacagGTGTTGTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164213695|gb|ES162797.1|ES162797EST: TATTCTTTAGGAAGGGGTTAAAAGAGATTAACAAACAAGGGAAAGAG GTCATGTATGACTATTGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACT
genomic: TATTCTTTAGGAAGGGGTTAAAAGAGATTAACAAACAAGGGAAAGAGgtgaattttt ... tacctgatagGTCATGTATGACTAT-GAGGACAGAATTAATCAAGCTGTTTTTCCTGGACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaataacttccagttactgactaattttatgtcgtttgtaactttacctgatagGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGA
ctttacct CT-rich tract
actaattttat TA-rich tract