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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatttgatgttgtggtttttttttttgaaagatcaacaaagtaaagcttgtggacctttagtgacttctcatgaatggtattagGTATCCTCTTATAGATGCAAACATGAAGGAGTTATCCACTACAGGTTTCATGTCAAATCGAGGCCGACAGATTGTTTGTTCGTTTCTTGTCCGGGACATG

Basic information

species Arabidopsis thaliana
transcript AT5G24850.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24850.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA04G07870.2 (Glycine max), 3'ss of exon 9
------------------------------------------------------------------------------------------------------gtaattatttgatgttgtggtttttttttttgaaagatcaacaaagt----aaagcttgtggacctttagtgacttctcatgaatggtattagGTATCCTCTTATAGATGCAAACATGAAGGAGTTATCCACTACAGGTTTCATGTCAAATCGAGGCCGACAGATTGTTTGTTCGTTTCTTGTCCGGGACATG
                                                                                                        || ||    || |    ||   |||         ||  |||   |    | |   | |     ||  || | || |||| ||   |  |||||||||||| |||||||| || ||||| || ||||| |||||||| || |||||||||||||| || |||                              
gtatgttcaactactattactttatactatgtttgttgtcttataattgaaacctaaaatttgtccctgtcgagacataggttttattcatttatgtaccaaagaactaggccatctacatgtgcatttccaaagtgaattgacattttcttcacacaattttttttttctgtcaattgtcataaac--ttctagGTATCCTCTGATAGATGCCAATATGAAAGAATTATCAACTACAGGATTTATGTCAAATCGAGGACGGCAG------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatcaacaaagtaaagcttgtggacctttagtgacttctcatgaatggtattagGTATCCTCTTATAGATGCAAACATGAAGGAGTTATCCACTACAGGTTTCATGTCAAATCGAGGCCGACAGATTGTTTGTTCGTTTCTTGTCCGGGACATG
        aaagtaaa  TA-rich tract