1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtatctttacattatagagctgtcttttccccttatttttcttcatgtcaatggatcctgtaaaaaataagagaggtctctggtgggagttctgttatatcctccatgtcttcattggtttggttctaatggttttcttatagATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGACACAGCAGAGGCAGCTACGAGAATACGGCGTGAATTGGCTGCACGTGGATGGAGTTTACGGTCTT
species | Arabidopsis thaliana |
transcript | AT5G22350.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTTACAGGTTTCGAAGAT ATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGACACAGCAGAGGCAGCTEST: gi|116460255|gb|EG502847.1|EG502847
genomic: ATTTACAGGTTTCGAAGATgtaagtatct ... tttcttatagATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGACACAGCAGAGGCAGCT
EST: AGTCTTTGAGGGAGCGAGGAGTTGTCCGCTCATTTACAGGTTTCGAAGAT ATGTCGGAAAGTTGGAGTTATCCGCCTATTGAATGACACAGCAGAGGCAGCEST: gi|124826104|gb|EH910970.1|EH910970
genomic: AGTCTTTGAGGGAGCGAGGAGTTGTCCGCTCATTTACAGGTTTCGAAGATgtaagtatct ... tttcttatagATGTCGGAAAGTTGGAGTTATCCGCC-ATTGAATGACACAGCAGAGGCAGC
EST: GGGAGCGAGGAGTTGTCCGCTCATTTACAGGTTTCGAAGAT ATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGA
genomic: GGGAGCGAGGAGTTGTCCGCTCATTTACAGGTTTCGAAGATgtaagtatct ... tttcttatagATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGA
gttctgttatatcctccatgtcttcattggtttggttctaatggttttcttatagATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGACACAGCAGAGGCAGCTACGAGAATACGGCGTGAATTGGCTGCACGTGGATGGAGTTTACGGTCTT
ttctaat putative branch site (score: 2)
ttttcttat putative PPT
ttttcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatctttacattatagagctgtcttttccccttatttttcttcatgtcaatggatcctgtaaaaaataagagaggtctctggtgggagttctgttatatcctccatgtcttcattggtttggttctaatggttttcttatagATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGACACAGCAGAGGCAGCTACGAGAATACGGCGTGAATTGGCTGCACGTGGATGGAGTTTACGGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA