1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttactcaattgtcatttagcttttggatttcaattactacgaacaacattctaatagatttatcattttgttcacagATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGCTTGGTTCTACTTGGGGAGATTGGGCAAAGAACTTCACTAAG
species | Arabidopsis thaliana |
transcript | AT5G22330.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTATGATCCCTCTGAAATGATCCAG ATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGCEST: gi|116443984|gb|EG486576.1|EG486576
genomic: CTATGATCCCTCTGAAATGATCCAGgttactcaat ... ttgttcacagATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGC
EST: GATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGAAATGATCCAG ATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGCEST: gi|164226198|gb|ES003248.1|ES003248
genomic: GATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGAAATGATCCAGgttactcaat ... ttgttcacagATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGC
EST: GATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGAAATGATCCAG ATTATAGCCATTCGTGCACAAGTTGAAGAA
genomic: GATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGAAATGATCCAGgttactcaat ... ttgttcacagATTATAGCCATTCGTGCGCAAGTTGAAGAA
ttggatttcaattactacgaacaacattctaatagatttatcattttgttcacagATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGCTTGGTTCTACTTGGGGAGATTGGGCAAAGAACTTCACTAAG
ttctaat putative branch site (score: 2)
ttttgttc putative PPT
attctaatagatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttactcaattgtcatttagcttttggatttcaattactacgaacaacattctaatagatttatcattttgttcacagATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATGCTTGGTTCTACTTGGGGAGATTGGGCAAAGAACTTCACTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC