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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggaatataccttaacctaggtttattattcaaactatttcatttttacccccctgatatgacatagtcctgcagAGAAACGATATGGTGGAGTTTTTCGGTGAGCAGCTGTCTGGCTTTGCTTTCACTTCGAATGGGTGGGTCCAGTCATATGGGTCCCGCTGTGTCAAGCCAC

Basic information

species Arabidopsis thaliana
transcript AT5G20980.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20980.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA13G15140.2 (Glycine max), 3'ss of exon 9
------------------------gtgggaatataccttaacctaggtttattattcaaactat--ttcatttttacccccctgatatgacatagtcctgcagAGAAACGATATGGTGGAGTTTTTCGGTGAGCAGCTGTCTGGCTTTGCTTTCACTTCGAATGGGTGGGTCCAGTCATATGGGTCCCGCTGTGTCAAGCCAC
                         | | | ||||       ||   ||| |||    || |||  || |    |       ||| |   | |     | ||||| || || ||||| ||||  || || |||||  | |||||||||||||| ||| | || |||||||| || |||||||| ||||||||||||||||| |
gtgaggagatgatatttgttattattagtagtataataaggacttcttttcttaagtgaaatatgctttaaaacttaattgttgaaaaatctttcctattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCTTTTACTGCCAACGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAGCCTC

upper sequence: AT5G20980.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA04G30350.1 (Glycine max), 3'ss of exon 9
--------------------------gtgggaatataccttaacctaggtttattattcaaac-tatttcatttttacccccctgatatgacatagtcctgcagAGAAACGATATGGTGGAGTTTTTCGGTGAGCAGCTGTCTGGCTTTGCTTTCACTTCGAATGGGTGGGTCCAGTCATATGGGTCCCGCTGTGTCAAGCCAC
                           ||| | | ||    |  |    ||  | | | |||  |   | |   ||       ||| |   | |     | ||||| || || ||||| ||||  || || |||||  | ||||||||||| || ||| | ||||||||||| || |||||||| |||||||||||||| || |
gtgaggagagatgatatttgttattattggtagtttaataaagacctctttcttaagtgaaatatggctaaaaatttaattgttgaaaaatcttgccaattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCATTTACTGCCAATGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAACCTC

upper sequence: AT5G20980.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------------gtgggaatataccttaacctaggttt-attattcaaactatttcatttttacccccctgatatgacatagtcctgcagAGAAACGATATGGTGGAGTTTTTCGGTGAGCAGCTGTCTGGCTTTGCTTTCACTTCGAATGGGTGGGTCCAGTCATATGGGTCCCGCTGTGTCAAGCCAC
                                            |  ||||  ||    | ||    |   || |||  |||||||| | |     |    ||| | |  |  |||||||||| || ||||| ||||  || || |||||  | || || ||||| ||||||   |||||||||||||| || ||||||||||| |||||||||||||
gtgatttctcttcctaattatctaaaattaattcaatgcttcatggctatattttgttatgggaaagaaggtttaaataatttcattgtaatttgtca---atggcttgatgatgcagAGAAATGACATGGTTGAGTACTTTGGGGAGCAATTATCAGGTTTTGCCTTCACTGTCAATGGGTGGGTCCAATCTTATGGGTCCCGTTGTGTCAAGCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttattattcaaactatttcatttttacccccctgatatgacatagtcctgcagAGAAACGATATGGTGGAGTTTTTCGGTGAGCAGCTGTCTGGCTTTGCTTTCACTTCGAATGGGTGGGTCCAGTCATATGGGTCCCGCTGTGTCAAGCCAC
                               ccctgat  putative branch site (score: 4)
     ttattcaaactatttc  TA-rich tract