1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaggtagaggatgagtgacctggcaaaacttttttctaagtaatctttgatatttccttgattgcatcaaatgttcagtccctacatgtgaggcctccaatgttactgctacatagaaagttgttgacacacttgtaaaggtttaactctcaagctcttttgtagATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTCATGAGACGGTTATCTGGCTACCCTACTACTCCGAAAGAAGATGATGCAT
species | Arabidopsis thaliana |
transcript | AT5G14260.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCCCAA-GTCCAGTTTGTCCG ATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTEST: gi|86081117|gb|DR376874.1|DR376874
genomic: TCCCAAGGTCCAGTTTGTCCGgtaggtagag ... tcttttgtagATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACT
EST: CTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCG ATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTCEST: gi|86078005|gb|DR373762.1|DR373762
genomic: CTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCGgtaggtagag ... tcttttgtagATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTC
EST: ATCCTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCG ATGASCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTC
genomic: ATCCTTCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCGgtaggtagag ... tcttttgtagATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTC
acatagaaagttgttgacacacttgtaaaggtttaactctcaagctcttttgtagATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTCATGAGACGGTTATCTGGCTACCCTACTACTCCGAAAGAAGATGATGCAT
gtttaac putative branch site (score: 3)
ctcttttgt putative PPT
ttgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtagaggatgagtgacctggcaaaacttttttctaagtaatctttgatatttccttgattgcatcaaatgttcagtccctacatgtgaggcctccaatgttactgctacatagaaagttgttgacacacttgtaaaggtttaactctcaagctcttttgtagATGAGCCCTTGTATGGAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTCATGAGACGGTTATCTGGCTACCCTACTACTCCGAAAGAAGATGATGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG