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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgttcatgtttttgcgcaatccacacataagcttatggtagggattaagtaacacagccttgcaaaattttcagGAGGAAGTTGTTCTTAAGCGGTGCTGGCTAGCTCGGTATTGGGGTCTAGCTTCCAGATATG

Basic information

species Arabidopsis thaliana
transcript AT5G13260.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13260.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA10G44630.1 (Glycine max), 3'ss of exon 9
gtttgtgttcatgtttttgcgcaatccacacataagcttatggtagggattaagtaacacagccttgcaaaatttt-------cagGAGGAAGTTGTTCTTAAGCGGTGCTGGCTAGCTCGGTATTGGGGTCTAGCTTCCAGATATG
|| | |  |       ||||   |     | ||  |  | |  |||  ||| || |     |   |  | | ||||       ||||| ||||||||||| ||| |||| ||||| ||||| ||||||||| ||||| | | |||||
gtatatacttccacagttgcagga---gtaaattcgtatttattagttatttagaatacttgttatatagatttttttcttgtcagGAAGAAGTTGTTCTAAAGAGGTGTTGGCTTGCTCGTTATTGGGGTTTAGCTGCAAAATATG

upper sequence: AT5G13260.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv01s0244g00070.t01 (Vitis vinifera), 3'ss of exon 9
gtttgtgttcatgtttttgcgcaatccacacataagcttatggtagggattaagtaacacagccttgcaaaattttcagGAGGAAGTTGTTCTTAAGCGGTGCTGGCTAGCTCGGTATTGGGGTCTAGCTTCCAGATATG
|||||| ||    |  || |   | |   |       | ||  | | | |||| |   |   || |    |  |||||||||||||||||||||||| |||| ||||| ||||| ||||||||| ||||| | ||  |||
gtttgtatttgcatacttccaagaactttatcagtaatcatt-tggaggttaattg-tattaccatatccacatttcagGAGGAAGTTGTTCTTAAGAGGTGTTGGCTTGCTCGCTATTGGGGTTTAGCTGCAAGGCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacacataagcttatggtagggattaagtaacacagccttgcaaaattttcagGAGGAAGTTGTTCTTAAGCGGTGCTGGCTAGCTCGGTATTGGGGTCTAGCTTCCAGATATG
                           aagtaac  putative branch site (score: 2)
                                                ttttc  putative PPT
                                            aaaattttca  TA-rich tract