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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacttttgcacaacttgatgcaacatgttacattgaagaaagagtctgatggatccaattttgttgcagGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTGGACTAACTCTATAGGTGCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTACCAA

Basic information

species Arabidopsis thaliana
transcript AT5G12950.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063712|gb|DR359469.1|DR359469
EST:     CGTGGGATCCGTACATGCGTGTGACATTCACTCTTTCTTCTTCCAAAGTG                         GGAGTGGCGAAGGAGT
genomic: CGTGGGATCCGTACATGCGTGTGACATTCACTCTTTCTTCTTCCAAAGTGgtaaaacttt ... tttgttgcagGGAGTGGCGAAGGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgcaacatgttacattgaagaaagagtctgatggatccaattttgttgcagGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTGGACTAACTCTATAGGTGCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTACCAA
                             gtctgat  putative branch site (score: 4)
                                            ttttgtt  putative PPT
                                          aattttgtt  TA-rich tract