1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtctctcaatttgtctttaagcttgtttacataagttgattgatgctttaaagttattaatttattctgcagAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCATGGAG
species | Arabidopsis thaliana |
transcript | AT5G09900.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACAT AATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTEST: gi|124711730|gb|EH803132.1|EH803132
genomic: CTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATgtaagtctct ... tattctgcagAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTT
EST: AAACTGAGAATCATCGAACAT AATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTEST: gi|86083515|gb|DR379274.1|DR379274
genomic: AAACTGAGAATCATCGAACATgtaagtctct ... tattctgcagAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTT
EST: CTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACAT AATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTT
genomic: CTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATgtaagtctct ... tattctgcagAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTT
taagcttgtttacataagttgattgatgctttaaagttattaatttattctgcagAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCATGGAG
tattaat putative branch site (score: 2)
tttattct CT-rich tract
attgatgctttaaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctctcaatttgtctttaagcttgtttacataagttgattgatgctttaaagttattaatttattctgcagAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA