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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttgtctgcagaaattctttctaaatactgtccttctcctttggttattgagttattggttttatctctctttagGTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTTCCATTTGGGAGTCCAGCAGCAGAGAGACGGGTCTGTCTTTCGAGTATCA

Basic information

species Arabidopsis thaliana
transcript AT5G07350.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164014379|gb|ES145887.1|ES145887
EST:     CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAG                         GTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGA
genomic: CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaacttgtc ... ctctctttagGTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGA
EST: gi|116439364|gb|EG481956.1|EG481956
EST:     CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAG                         GTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTT
genomic: CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaacttgtc ... ctctctttagGTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTT
EST: gi|116439363|gb|EG481955.1|EG481955
EST:     CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAG                         GTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTT
genomic: CTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAAGgtaacttgtc ... ctctctttagGTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaatactgtccttctcctttggttattgagttattggttttatctctctttagGTAGTGGAAGTGGTGAGTGGGGATTGTCTAATAGTTGCCGATGATGCTGTTCCATTTGGGAGTCCAGCAGCAGAGAGACGGGTCTGTCTTTCGAGTATCA
 ttctaaa  putative branch site (score: 2)
                                       ttttatctctcttt  putative PPT
                                       ttttatct  TA-rich tract