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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcggtctaaattgttgtcatatcctttgagagatgtttattagtgtcctttgaaaaaaccgggttttgtgtttcagGTTGTGAGCATCAGCTATGTGTGAGATGTGCGTTATACCTTTGCTCTTCAAGCAATGTTCCCTCGGTGACAGTTGGCCCGCCCGGATCAATTCCTTGCCC

Basic information

species Arabidopsis thaliana
transcript AT5G07270.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164107037|gb|ES087599.1|ES087599
EST:     CTGTGCCGTTTGCCTGGAAAGAACATGCACAGTTGCTGCTGAAG                         GTTGTGAGCATCAGCTATGTGTGAGATGTGCGTTATACCTTTG
genomic: CTGTGCCGTTTGCCTGGAAAGAACATGCACAGTTGCTGCTGAAGgttcggtcta ... tgtgtttcagGTTGTGAGCATCAGCTATGTGTGAGATGTGCGTTATACCTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctttgagagatgtttattagtgtcctttgaaaaaaccgggttttgtgtttcagGTTGTGAGCATCAGCTATGTGTGAGATGTGCGTTATACCTTTGCTCTTCAAGCAATGTTCCCTCGGTGACAGTTGGCCCGCCCGGATCAATTCCTTGCCC
           atgtttatta  TA-rich tract