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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctaaggaaacattaatagttggctttggcttgtgttgtaatggctctgttgttgatgtgttggtaaattggatttgtgcagATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCATCATCATCATCAAATCAGTTCTGGATGAGAATGAAACCTGAGTGTTTTCT

Basic information

species Arabidopsis thaliana
transcript AT5G05930.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125312052|gb|EL326137.1|EL326137
EST:     ATCTTCTCCTG                         ATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT
genomic: ATCTTCTCCTGgtaatctaag ... atttgtgcagATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT
EST: gi|19743498|gb|AU228851.1|AU228851
EST:     GCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTG                         ATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT
genomic: GCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTGgtaatctaag ... atttgtgcagATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT
EST: gi|86084319|gb|DR380078.1|DR380078
EST:     GCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTG                         ATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT
genomic: GCCTGGAGAATGCCCGGAAATCGTTTGGCACAGACGAAGATCTTCTCCTGgtaatctaag ... atttgtgcagATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcttgtgttgtaatggctctgttgttgatgtgttggtaaattggatttgtgcagATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAATAGTTGTCATCATCATCATCAAATCAGTTCTGGATGAGAATGAAACCTGAGTGTTTTCT
                       tgttgat  putative branch site (score: 4)
                                     taaatt  TA-rich tract