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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtctctcgacaaattttcctagttgtgcttcccattgtgaggcaattaatttatatcttattcctgatagATAGTCTTAGCTGCAAAAGCTCGAACCCCTCGTACCCCATCCGGAGAAAGTGCACAATGGCCTCTGACAGGTGGTGTTCCAAGCCACGTTGATGACTACA

Basic information

species Arabidopsis thaliana
transcript AT5G05570.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116465013|gb|EG507605.1|EG507605
EST:     CGTTTTCTGCATTAAATGTGAATGATAAAACGTCATTAGCTCTTTCTGAG                         ATAGTCTTAGCTGCAAAAGCTCGAACCCCTCGTACCCCATCCGGAGAAAGT
genomic: CGTTTTCTGCATTAAATGTGAATGATAAAACGTCATTAGCTCTTTCTGAGgtagtctctc ... ttcctgatagATAGTCTTAGCTGCAAAAGCTCGAACCCCTCGTACCCCATCCGGAGAAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctagttgtgcttcccattgtgaggcaattaatttatatcttattcctgatagATAGTCTTAGCTGCAAAAGCTCGAACCCCTCGTACCCCATCCGGAGAAAGTGCACAATGGCCTCTGACAGGTGGTGTTCCAAGCCACGTTGATGACTACA
                            aattaat  putative branch site (score: 3)
                                        tcttattcct  putative PPT
                            aattaatttatatctt  TA-rich tract