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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataattataatgcttcttcaacctgtcttaatgaaggagctgtataaaatcatcctaattgaatcgattgatataatgattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTTCCATACTTTTACTCTCGAGCCTTTGATCTCTCATGGCAATTCTACGGTG

Basic information

species Arabidopsis thaliana
transcript AT5G03630.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03630.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 3'ss of exon 9
----gtaataattataatgcttcttcaacctgtcttaatgaaggagctgtataaaatcatcctaattgaatcgattgat-------ataatgattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTTCCATACTTTTACTCTCGAGCCTTTGATCTCTCATGGCAATTCTACGGTG
     |       || ||  ||| | |     ||  |||  |       |||  | |  |    | ||||||  |  ||           || || || |||||||||||||   |||||||||||| ||| ||  ||| |||||||| ||||||||||| |||||||| ||||||||||| || ||||| ||||| ||||
ctttttttctgccatgatcattccttaggtgctcaaaatatacattagatatgca-tttttaggagtgaatcagtgaattacttctggcttgtttatgcagGCAATCAAGGCAAGTGAGGAAGGGAAATCAGTTGAGGAGTATGACTACCTTCCATACTTCTACTCTCGTGCCTTTGATCTGTCCTGGCAGTTCTATGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116465830|gb|EG508422.1|EG508422
EST:     GCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
genomic: GCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
EST: gi|124745328|gb|EH836288.1|EH836288
EST:     GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGA
genomic: GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGA
EST: gi|86079524|gb|DR375281.1|DR375281
EST:     GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
genomic: GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
EST: gi|125196620|gb|EL211574.1|EL211574
EST:     GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
genomic: GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
EST: gi|116465831|gb|EG508423.1|EG508423
EST:     GCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATTTT
genomic: GCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaggagctgtataaaatcatcctaattgaatcgattgatataatgattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTTCCATACTTTTACTCTCGAGCCTTTGATCTCTCATGGCAATTCTACGGTG
                                  attgatataatgattt  TA-rich tract