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gtaagtttctttgtaaaataagtggcatttcttctatatgtaatatctttggataaggtatcggaaaaaaaaacgcatgataacttctgatgtactgatattttgcatgagatttactttggtcaactctttggcagGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTG
species | Arabidopsis thaliana |
transcript | AT4G39460.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCC GCGCGTAGAGAGCTTAGTGATEST: gi|86037538|gb|DR333293.1|DR333293
genomic: CTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCCgtaagtttct ... tctttggcagGCGCGTAGAGAGCTTAGTGAT
EST: CTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAANAGCC GCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTEST: gi|125089220|gb|EL147670.1|EL147670
genomic: CTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCCgtaagtttct ... tctttggcagGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCT
EST: AGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCC GCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGEST: gi|125212681|gb|EL227635.1|EL227635
genomic: AGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCCgtaagtttct ... tctttggcagGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTG
EST: CTTGGGGTATAAAAAAGCC GCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTEST: gi|86082868|gb|DR378627.1|DR378627
genomic: CTTGGGGTATAAAAAAGCCgtaagtttct ... tctttggcagGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCT
EST: CTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCC GCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTEST: gi|124727293|gb|EH818695.1|EH818695
genomic: CTATACAGTTCTGCATATATGAGCAGCTTTGCTTGGGGTATAAAAAAGCCgtaagtttct ... tctttggcagGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCT
EST: CTTTGCTTGGGGTATAAAAAAGCC GCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTEST: gi|163994833|gb|ES152733.1|ES152733
genomic: CTTTGCTTGGGGTATAAAAAAGCCgtaagtttct ... tctttggcagGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCT
EST: TTTGCTTGGGGTATAAAAAAGCC GCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGT
genomic: TTTGCTTGGGGTATAAAAAAGCCgtaagtttct ... tctttggcagGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGT
acttctgatgtactgatattttgcatgagatttactttggtcaactctttggcagGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTG
tactgat putative branch site (score: 2)
ctcttt putative PPT
tgatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctttgtaaaataagtggcatttcttctatatgtaatatctttggataaggtatcggaaaaaaaaacgcatgataacttctgatgtactgatattttgcatgagatttactttggtcaactctttggcagGCGCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT